Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP32_RS06585 Genome accession   NZ_CP148227
Coordinates   1277903..1278418 (-) Length   171 a.a.
NCBI ID   WP_002888104.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1272903..1283418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS06570 (WHP32_06570) - 1273012..1274829 (-) 1818 WP_338878246.1 motility associated factor glycosyltransferase family protein -
  WHP32_RS06575 (WHP32_06575) - 1274829..1276649 (-) 1821 WP_338878247.1 motility associated factor glycosyltransferase family protein -
  WHP32_RS06580 (WHP32_06580) - 1276659..1277903 (-) 1245 WP_338878248.1 DUF2920 family protein -
  WHP32_RS06585 (WHP32_06585) ctsG 1277903..1278418 (-) 516 WP_002888104.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP32_RS06590 (WHP32_06590) tsaD 1278419..1279426 (-) 1008 WP_002871412.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP32_RS06595 (WHP32_06595) - 1279423..1280817 (-) 1395 WP_338878249.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP32_RS06600 (WHP32_06600) dxr 1280819..1281889 (-) 1071 WP_338877978.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP32_RS06605 (WHP32_06605) cdsA 1281886..1282611 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  WHP32_RS06610 (WHP32_06610) - 1282620..1282958 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18636.48 Da        Isoelectric Point: 6.4682

>NTDB_id=953077 WHP32_RS06585 WP_002888104.1 1277903..1278418(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0040]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=953077 WHP32_RS06585 WP_002888104.1 1277903..1278418(-) (ctsG) [Campylobacter jejuni strain Z1323CCJ0040]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942