Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP32_RS05625 Genome accession   NZ_CP148227
Coordinates   1083765..1084724 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1064081..1088766 1083765..1084724 within 0


Gene organization within MGE regions


Location: 1064081..1088766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS05530 (WHP32_05530) pglI 1064081..1065010 (-) 930 WP_002890470.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  WHP32_RS05535 (WHP32_05535) pglH 1065003..1066082 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  WHP32_RS05540 (WHP32_05540) pglK 1066079..1067773 (-) 1695 WP_002890469.1 ABC-type lipopolysaccharide transporter PglK -
  WHP32_RS05545 (WHP32_05545) galE 1067767..1068753 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  WHP32_RS05550 (WHP32_05550) - 1068811..1069605 (-) 795 WP_002853812.1 3'-5' exonuclease -
  WHP32_RS05555 (WHP32_05555) waaC 1069671..1070699 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  WHP32_RS05560 (WHP32_05560) htrB 1070689..1071576 (+) 888 WP_002890465.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHP32_RS05565 (WHP32_05565) - 1071573..1073120 (+) 1548 WP_002858148.1 glycosyltransferase -
  WHP32_RS05570 (WHP32_05570) - 1073124..1074296 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  WHP32_RS05575 (WHP32_05575) - 1074280..1075275 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  WHP32_RS05580 (WHP32_05580) - 1075333..1076481 (+) 1149 WP_338877971.1 glycosyltransferase family 2 protein -
  WHP32_RS05585 (WHP32_05585) wlaN 1076470..1077381 (-) 912 WP_002858039.1 beta-1,3 galactosyltransferase -
  WHP32_RS05590 (WHP32_05590) cstIII 1077436..1078320 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  WHP32_RS05595 (WHP32_05595) neuB1 1078301..1079332 (+) 1032 WP_002858213.1 sialic acid synthase -
  WHP32_RS05600 (WHP32_05600) neuC 1079329..1080444 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  WHP32_RS05605 (WHP32_05605) - 1080441..1081355 (+) 915 Protein_1083 beta-1,4-N-acetylgalactosaminyltransferase -
  WHP32_RS05610 (WHP32_05610) - 1081389..1082051 (+) 663 WP_002881429.1 N-acylneuraminate cytidylyltransferase -
  WHP32_RS05615 (WHP32_05615) - 1082046..1082898 (-) 853 Protein_1085 glycosyltransferase -
  WHP32_RS05620 (WHP32_05620) waaV 1082882..1083706 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  WHP32_RS05625 (WHP32_05625) waaF 1083765..1084724 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP32_RS05630 (WHP32_05630) gmhA 1084705..1085265 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  WHP32_RS05635 (WHP32_05635) rfaE1 1085262..1086647 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP32_RS05640 (WHP32_05640) rfaD 1086640..1087593 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP32_RS05645 (WHP32_05645) gmhB 1087594..1088154 (-) 561 WP_052782596.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP32_RS05650 (WHP32_05650) - 1088235..1088537 (+) 303 WP_002852762.1 cytochrome c -
  WHP32_RS05655 (WHP32_05655) ccoS 1088560..1088766 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=953073 WHP32_RS05625 WP_002875425.1 1083765..1084724(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0040]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=953073 WHP32_RS05625 WP_002875425.1 1083765..1084724(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0040]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1