Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP32_RS03330 Genome accession   NZ_CP148227
Coordinates   639935..640372 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0040     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634935..645372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP32_RS03310 (WHP32_03310) kdpD 635427..637247 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  WHP32_RS03315 (WHP32_03315) uvrB 637349..639322 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  WHP32_RS03320 (WHP32_03320) - 639476..639706 (+) 231 WP_002852327.1 hypothetical protein -
  WHP32_RS03325 (WHP32_03325) - 639696..639938 (+) 243 WP_002854947.1 hypothetical protein -
  WHP32_RS03330 (WHP32_03330) Cj0683 639935..640372 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP32_RS03335 (WHP32_03335) priA 640354..642207 (+) 1854 WP_002852169.1 primosomal protein N' -
  WHP32_RS03340 (WHP32_03340) cipA 642217..643610 (-) 1394 Protein_646 DUF2972 domain-containing protein -
  WHP32_RS03345 (WHP32_03345) ispG 643758..644831 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=953068 WHP32_RS03330 WP_002852324.1 639935..640372(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0040]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=953068 WHP32_RS03330 WP_002852324.1 639935..640372(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0040]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1