Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FT_RS06340 Genome accession   NZ_CP172387
Coordinates   1216493..1216873 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain YH510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1211493..1221873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FT_RS06315 (ACH6FT_06315) aspS 1212006..1213757 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  ACH6FT_RS06320 (ACH6FT_06320) - 1213754..1214335 (+) 582 WP_395940914.1 adenylate kinase -
  ACH6FT_RS06325 (ACH6FT_06325) ppa 1214339..1214857 (+) 519 WP_002776378.1 inorganic diphosphatase -
  ACH6FT_RS06330 (ACH6FT_06330) msrA 1214905..1215405 (+) 501 WP_072225248.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FT_RS06335 (ACH6FT_06335) - 1215628..1216482 (-) 855 WP_370658880.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FT_RS06340 (ACH6FT_06340) dprB 1216493..1216873 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FT_RS06345 (ACH6FT_06345) dprA 1216870..1217640 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  ACH6FT_RS06350 (ACH6FT_06350) - 1217630..1218682 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  ACH6FT_RS06355 (ACH6FT_06355) ilvC 1218685..1219707 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  ACH6FT_RS06360 (ACH6FT_06360) - 1219830..1221764 (+) 1935 WP_002776352.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=953062 ACH6FT_RS06340 WP_002776373.1 1216493..1216873(-) (dprB) [Campylobacter coli strain YH510]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=953062 ACH6FT_RS06340 WP_002776373.1 1216493..1216873(-) (dprB) [Campylobacter coli strain YH510]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421