Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP40_RS04990 Genome accession   NZ_CP148223
Coordinates   966256..967215 (-) Length   319 a.a.
NCBI ID   WP_002852903.1    Uniprot ID   A0A5Y6P8U5
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 961256..972215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS04960 (WHP40_04960) ccoS 962213..962419 (+) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHP40_RS04965 (WHP40_04965) - 962442..962744 (-) 303 WP_002852762.1 cytochrome c -
  WHP40_RS04970 (WHP40_04970) gmhB 962826..963386 (+) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP40_RS04975 (WHP40_04975) rfaD 963387..964340 (+) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP40_RS04980 (WHP40_04980) rfaE1 964333..965718 (+) 1386 WP_002852777.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP40_RS04985 (WHP40_04985) gmhA 965715..966275 (+) 561 WP_002852775.1 D-sedoheptulose 7-phosphate isomerase -
  WHP40_RS04990 (WHP40_04990) waaF 966256..967215 (-) 960 WP_002852903.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP40_RS04995 (WHP40_04995) - 967274..968086 (+) 813 WP_002852816.1 glycosyltransferase family 2 protein -
  WHP40_RS05000 (WHP40_05000) - 968078..968419 (-) 342 WP_002852868.1 hypothetical protein -
  WHP40_RS05005 (WHP40_05005) - 968464..968910 (-) 447 WP_002852791.1 hypothetical protein -
  WHP40_RS05010 (WHP40_05010) - 968898..969563 (-) 666 WP_228567890.1 acylneuraminate cytidylyltransferase family protein -
  WHP40_RS05015 (WHP40_05015) - 969560..969892 (-) 333 WP_019260376.1 hypothetical protein -
  WHP40_RS05020 (WHP40_05020) - 969964..970506 (-) 543 Protein_972 beta-1,4-N-acetylgalactosaminyltransferase -
  WHP40_RS05025 (WHP40_05025) neuC 970499..971623 (-) 1125 WP_002859249.1 UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36766.44 Da        Isoelectric Point: 10.4054

>NTDB_id=952998 WHP40_RS04990 WP_002852903.1 966256..967215(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0045]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=952998 WHP40_RS04990 WP_002852903.1 966256..967215(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0045]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y6P8U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.984

100

0.95