Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHP40_RS03980 Genome accession   NZ_CP148223
Coordinates   763131..764099 (-) Length   322 a.a.
NCBI ID   WP_002868462.1    Uniprot ID   A0A5Z0B9N9
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758131..769099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS03955 (WHP40_03955) - 759663..760217 (+) 555 WP_002855904.1 membrane protein -
  WHP40_RS03965 (WHP40_03965) ceuB 760443..761435 (-) 993 WP_002859640.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHP40_RS03970 (WHP40_03970) ceuD 761448..762203 (-) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  WHP40_RS03975 (WHP40_03975) ceuC 762200..763138 (-) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  WHP40_RS03980 (WHP40_03980) ceuB 763131..764099 (-) 969 WP_002868462.1 ABC transporter permease Machinery gene
  WHP40_RS03985 (WHP40_03985) pldA 764185..765174 (-) 990 WP_002868461.1 phospholipase A -
  WHP40_RS03990 (WHP40_03990) mobA 765171..765746 (-) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHP40_RS03995 (WHP40_03995) - 765808..767115 (+) 1308 WP_002868460.1 NFACT family protein -
  WHP40_RS04000 (WHP40_04000) - 767117..767455 (+) 339 WP_002852397.1 hypothetical protein -
  WHP40_RS04005 (WHP40_04005) cdsA 767464..768189 (+) 726 WP_002834214.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35467.43 Da        Isoelectric Point: 9.6678

>NTDB_id=952993 WHP40_RS03980 WP_002868462.1 763131..764099(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0045]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTIAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=952993 WHP40_RS03980 WP_002868462.1 763131..764099(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0045]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTATAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z0B9N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991