Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP40_RS03400 Genome accession   NZ_CP148223
Coordinates   640251..640859 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 635251..645859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS03390 (WHP40_03390) ctsR 638551..638868 (+) 318 WP_002851255.1 hypothetical protein Machinery gene
  WHP40_RS03395 (WHP40_03395) ctsD 638840..640258 (+) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP40_RS03400 (WHP40_03400) ctsP 640251..640859 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP40_RS03405 (WHP40_03405) ctsX 640863..641450 (+) 588 WP_002851370.1 membrane protein Machinery gene
  WHP40_RS03410 (WHP40_03410) ctsE 641440..642999 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHP40_RS03415 (WHP40_03415) ctsF 642996..644177 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP40_RS03420 (WHP40_03420) - 644170..644934 (-) 765 WP_002851426.1 TSUP family transporter -
  WHP40_RS03425 (WHP40_03425) - 644938..645702 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=952987 WHP40_RS03400 WP_002851464.1 640251..640859(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0045]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=952987 WHP40_RS03400 WP_002851464.1 640251..640859(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0045]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995