Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FE_RS06290 Genome accession   NZ_CP172384
Coordinates   1201207..1201587 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain YH512     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1196207..1206587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FE_RS06265 (ACH6FE_06265) aspS 1196720..1198471 (+) 1752 WP_150966296.1 aspartate--tRNA ligase -
  ACH6FE_RS06270 (ACH6FE_06270) - 1198468..1199043 (+) 576 WP_002776379.1 adenylate kinase -
  ACH6FE_RS06275 (ACH6FE_06275) ppa 1199053..1199571 (+) 519 WP_002776378.1 inorganic diphosphatase -
  ACH6FE_RS06280 (ACH6FE_06280) msrA 1199619..1200119 (+) 501 WP_072225248.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FE_RS06285 (ACH6FE_06285) - 1200342..1201196 (-) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FE_RS06290 (ACH6FE_06290) dprB 1201207..1201587 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FE_RS06295 (ACH6FE_06295) dprA 1201584..1202354 (-) 771 WP_052779041.1 DNA-processing protein DprA Machinery gene
  ACH6FE_RS06300 (ACH6FE_06300) - 1202344..1203396 (-) 1053 WP_150966298.1 divergent polysaccharide deacetylase family protein -
  ACH6FE_RS06305 (ACH6FE_06305) ilvC 1203399..1204421 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  ACH6FE_RS06310 (ACH6FE_06310) - 1204544..1206478 (+) 1935 WP_150966300.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=952966 ACH6FE_RS06290 WP_002776373.1 1201207..1201587(-) (dprB) [Campylobacter coli strain YH512]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=952966 ACH6FE_RS06290 WP_002776373.1 1201207..1201587(-) (dprB) [Campylobacter coli strain YH512]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421