Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP87_RS06405 Genome accession   NZ_CP148222
Coordinates   1249362..1250321 (+) Length   319 a.a.
NCBI ID   WP_070309048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1235562..1262541 1249362..1250321 within 0


Gene organization within MGE regions


Location: 1235562..1262541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS06340 (WHP87_06340) pglK 1235562..1237256 (-) 1695 WP_004308588.1 ABC-type lipopolysaccharide transporter PglK -
  WHP87_RS06345 (WHP87_06345) galE 1237250..1238236 (-) 987 WP_057031449.1 UDP-glucose 4-epimerase GalE -
  WHP87_RS06350 (WHP87_06350) - 1238294..1239088 (-) 795 WP_002935018.1 3'-5' exonuclease -
  WHP87_RS06355 (WHP87_06355) waaC 1239155..1240183 (+) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  WHP87_RS06360 (WHP87_06360) htrB 1240173..1241060 (+) 888 WP_002871713.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHP87_RS06365 (WHP87_06365) - 1241057..1242607 (+) 1551 WP_032591562.1 glycosyltransferase -
  WHP87_RS06370 (WHP87_06370) - 1242611..1243789 (+) 1179 WP_032591565.1 glycosyltransferase family 9 protein -
  WHP87_RS06375 (WHP87_06375) - 1243786..1244925 (+) 1140 WP_032591568.1 glycosyltransferase family 4 protein -
  WHP87_RS06380 (WHP87_06380) - 1244922..1246121 (-) 1200 WP_032591570.1 glycosyltransferase family 8 protein -
  WHP87_RS06385 (WHP87_06385) - 1246114..1247265 (-) 1152 WP_032591573.1 glycosyltransferase family 8 protein -
  WHP87_RS06390 (WHP87_06390) - 1247278..1247820 (-) 543 WP_338878155.1 FkbM family methyltransferase -
  WHP87_RS06395 (WHP87_06395) - 1247814..1248425 (-) 612 WP_338878101.1 hypothetical protein -
  WHP87_RS06400 (WHP87_06400) waaV 1248488..1249303 (-) 816 WP_060806422.1 glycosyltransferase family 2 protein -
  WHP87_RS06405 (WHP87_06405) waaF 1249362..1250321 (+) 960 WP_070309048.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP87_RS06410 (WHP87_06410) gmhA 1250302..1250862 (-) 561 WP_020247045.1 D-sedoheptulose 7-phosphate isomerase -
  WHP87_RS06415 (WHP87_06415) rfaE1 1250859..1252244 (-) 1386 WP_060806424.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP87_RS06420 (WHP87_06420) rfaD 1252237..1253190 (-) 954 WP_002859254.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP87_RS06425 (WHP87_06425) gmhB 1253191..1253752 (-) 562 Protein_1247 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP87_RS06430 (WHP87_06430) - 1253833..1254135 (+) 303 WP_002852762.1 cytochrome c -
  WHP87_RS06435 (WHP87_06435) ccoS 1254158..1254364 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHP87_RS06440 (WHP87_06440) - 1254361..1256718 (-) 2358 WP_079757683.1 heavy metal translocating P-type ATPase -
  WHP87_RS06445 (WHP87_06445) rho 1256827..1258125 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  WHP87_RS06450 (WHP87_06450) dnaX 1258129..1259658 (+) 1530 WP_002878814.1 DNA polymerase III subunit gamma/tau -
  WHP87_RS06455 (WHP87_06455) - 1259655..1260176 (-) 522 WP_002853472.1 DUF2165 family protein -
  WHP87_RS06460 (WHP87_06460) copA 1260248..1262347 (-) 2100 WP_060806426.1 copper-translocating P-type ATPase CopA -
  WHP87_RS06465 (WHP87_06465) - 1262347..1262541 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36789.44 Da        Isoelectric Point: 10.4034

>NTDB_id=952964 WHP87_RS06405 WP_070309048.1 1249362..1250321(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0047]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQVLSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSLLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCDEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GSMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=952964 WHP87_RS06405 WP_070309048.1 1249362..1250321(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0047]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGTCCTATCTTTACGCAAAAAACTTGGCAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCTTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTCTGCGATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAACCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAATGACAGT
GGCTCTATGCACATAAGTGCGGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

91.85

100

0.919