Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP87_RS03380 Genome accession   NZ_CP148222
Coordinates   645370..645807 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640370..650807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS03355 (WHP87_03355) - 640863..642014 (+) 1152 WP_240682329.1 sensor histidine kinase KdpD -
  WHP87_RS03360 (WHP87_03360) - 642038..642682 (+) 645 WP_236343220.1 DUF4118 domain-containing protein -
  WHP87_RS03365 (WHP87_03365) uvrB 642784..644757 (-) 1974 WP_060806477.1 excinuclease ABC subunit UvrB -
  WHP87_RS03370 (WHP87_03370) - 644911..645141 (+) 231 WP_002852327.1 hypothetical protein -
  WHP87_RS03375 (WHP87_03375) - 645131..645373 (+) 243 WP_002854947.1 hypothetical protein -
  WHP87_RS03380 (WHP87_03380) Cj0683 645370..645807 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP87_RS03385 (WHP87_03385) priA 645789..647642 (+) 1854 WP_002859601.1 primosomal protein N' -
  WHP87_RS03390 (WHP87_03390) cipA 647652..649032 (-) 1381 Protein_656 DUF2972 domain-containing protein -
  WHP87_RS03395 (WHP87_03395) ispG 649178..650251 (+) 1074 WP_060806478.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952959 WHP87_RS03380 WP_002852324.1 645370..645807(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0047]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952959 WHP87_RS03380 WP_002852324.1 645370..645807(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0047]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGCAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1