Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHP79_RS07375 Genome accession   NZ_CP148221
Coordinates   1448934..1449902 (+) Length   322 a.a.
NCBI ID   WP_338878117.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0052     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443934..1454902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP79_RS07350 (WHP79_07350) cdsA 1444845..1445570 (-) 726 WP_032586801.1 phosphatidate cytidylyltransferase -
  WHP79_RS07355 (WHP79_07355) - 1445579..1445917 (-) 339 WP_338878116.1 hypothetical protein -
  WHP79_RS07360 (WHP79_07360) - 1445919..1447226 (-) 1308 WP_032587646.1 NFACT family protein -
  WHP79_RS07365 (WHP79_07365) mobA 1447288..1447863 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHP79_RS07370 (WHP79_07370) pldA 1447860..1448848 (+) 989 Protein_1437 phospholipase A -
  WHP79_RS07375 (WHP79_07375) ceuB 1448934..1449902 (+) 969 WP_338878117.1 ABC transporter permease Machinery gene
  WHP79_RS07380 (WHP79_07380) ceuC 1449895..1450833 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  WHP79_RS07385 (WHP79_07385) ceuD 1450830..1451585 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  WHP79_RS07390 (WHP79_07390) ceuB 1451598..1452590 (+) 993 WP_032586806.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHP79_RS07400 (WHP79_07400) - 1452816..1453370 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35427.32 Da        Isoelectric Point: 9.6678

>NTDB_id=952942 WHP79_RS07375 WP_338878117.1 1448934..1449902(+) (ceuB) [Campylobacter jejuni strain Z1323CCJ0052]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IASVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=952942 WHP79_RS07375 WP_338878117.1 1448934..1449902(+) (ceuB) [Campylobacter jejuni strain Z1323CCJ0052]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTATTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGCAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991