Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   ACH6FE_RS01545 Genome accession   NZ_CP172384
Coordinates   304007..304603 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH512     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299007..309603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FE_RS01530 (ACH6FE_01530) ctsR 301714..302025 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  ACH6FE_RS01535 (ACH6FE_01535) ctsD 302003..303421 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FE_RS01540 (ACH6FE_01540) ctsP 303414..304010 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  ACH6FE_RS01545 (ACH6FE_01545) ctsX 304007..304603 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  ACH6FE_RS01550 (ACH6FE_01550) ctsE 304596..306158 (+) 1563 WP_052784799.1 GspE/PulE family protein Machinery gene
  ACH6FE_RS01555 (ACH6FE_01555) ctsF 306145..307320 (+) 1176 WP_002834117.1 type II secretion system F family protein Machinery gene
  ACH6FE_RS01560 (ACH6FE_01560) - 307317..308081 (-) 765 WP_002784060.1 TSUP family transporter -
  ACH6FE_RS01565 (ACH6FE_01565) - 308084..308848 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=952936 ACH6FE_RS01545 WP_002779313.1 304007..304603(+) (ctsX) [Campylobacter coli strain YH512]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=952936 ACH6FE_RS01545 WP_002779313.1 304007..304603(+) (ctsX) [Campylobacter coli strain YH512]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAAGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434