Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QML92_RS08230 Genome accession   NZ_AP025937
Coordinates   1646567..1647634 (-) Length   355 a.a.
NCBI ID   WP_281956482.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700792     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641567..1652634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML92_RS08215 (PC0780_16390) treR 1643356..1644066 (+) 711 WP_000760675.1 trehalose operon repressor Regulator
  QML92_RS08220 - 1644221..1645555 (+) 1335 Protein_1636 ISL3 family transposase -
  QML92_RS08225 (PC0780_16420) amiF 1645630..1646556 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  QML92_RS08230 (PC0780_16430) amiE 1646567..1647634 (-) 1068 WP_281956482.1 ABC transporter ATP-binding protein Regulator
  QML92_RS08235 (PC0780_16440) amiD 1647643..1648569 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  QML92_RS08240 (PC0780_16450) amiC 1648569..1650065 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  QML92_RS08245 (PC0780_16460) amiA3 1650132..1652111 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39550.14 Da        Isoelectric Point: 4.8727

>NTDB_id=95291 QML92_RS08230 WP_281956482.1 1646567..1647634(-) (amiE) [Streptococcus pneumoniae strain PZ900700792]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRSQDL
TTLSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=95291 QML92_RS08230 WP_281956482.1 1646567..1647634(-) (amiE) [Streptococcus pneumoniae strain PZ900700792]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTCGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTAGTCAGGACTTG
ACAACTTTATCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.887

100

0.879
  amiE Streptococcus thermophilus LMG 18311

86.197

100

0.862
  amiE Streptococcus thermophilus LMD-9

86.197

100

0.862
  oppD Streptococcus mutans UA159

54.261

99.155

0.538

Multiple sequence alignment