Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FQ_RS03130 Genome accession   NZ_CP172383
Coordinates   605015..605398 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 600015..610398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FQ_RS03110 (ACH6FQ_03110) - 600094..602028 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  ACH6FQ_RS03115 (ACH6FQ_03115) ilvC 602147..603169 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  ACH6FQ_RS03120 (ACH6FQ_03120) - 603173..604255 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  ACH6FQ_RS03125 (ACH6FQ_03125) dprA 604245..605018 (+) 774 WP_002906182.1 DNA-processing protein DprA Machinery gene
  ACH6FQ_RS03130 (ACH6FQ_03130) dprB 605015..605398 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FQ_RS03135 (ACH6FQ_03135) - 605427..606266 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FQ_RS03140 (ACH6FQ_03140) msrA 606442..606939 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FQ_RS03145 (ACH6FQ_03145) ppa 606980..607498 (-) 519 WP_002852138.1 inorganic diphosphatase -
  ACH6FQ_RS03150 (ACH6FQ_03150) adk 607508..608086 (-) 579 WP_002906185.1 adenylate kinase -
  ACH6FQ_RS03155 (ACH6FQ_03155) aspS 608083..609834 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=952895 ACH6FQ_RS03130 WP_002858579.1 605015..605398(+) (dprB) [Campylobacter jejuni strain YH004]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952895 ACH6FQ_RS03130 WP_002858579.1 605015..605398(+) (dprB) [Campylobacter jejuni strain YH004]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449