Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FY_RS03440 Genome accession   NZ_CP172382
Coordinates   640962..641345 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 635962..646345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FY_RS03420 (ACH6FY_03420) - 636041..637975 (-) 1935 WP_087604543.1 ribonuclease R family protein -
  ACH6FY_RS03425 (ACH6FY_03425) ilvC 638094..639116 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  ACH6FY_RS03430 (ACH6FY_03430) - 639120..640202 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  ACH6FY_RS03435 (ACH6FY_03435) dprA 640192..640965 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  ACH6FY_RS03440 (ACH6FY_03440) dprB 640962..641345 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FY_RS03445 (ACH6FY_03445) - 641374..642213 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FY_RS03450 (ACH6FY_03450) msrA 642389..642886 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FY_RS03455 (ACH6FY_03455) ppa 642927..643445 (-) 519 WP_002858521.1 inorganic diphosphatase -
  ACH6FY_RS03460 (ACH6FY_03460) adk 643455..644033 (-) 579 WP_002858481.1 adenylate kinase -
  ACH6FY_RS03465 (ACH6FY_03465) aspS 644030..645781 (-) 1752 WP_014516733.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=952847 ACH6FY_RS03440 WP_002858579.1 640962..641345(+) (dprB) [Campylobacter jejuni strain YH006]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952847 ACH6FY_RS03440 WP_002858579.1 640962..641345(+) (dprB) [Campylobacter jejuni strain YH006]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449