Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHQ41_RS06840 Genome accession   NZ_CP148215
Coordinates   1310290..1310727 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0058     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1305290..1315727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ41_RS06825 (WHQ41_06825) ispG 1305846..1306919 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  WHQ41_RS06830 (WHQ41_06830) cipA 1307065..1308445 (+) 1381 Protein_1323 DUF2972 domain-containing protein -
  WHQ41_RS06835 (WHQ41_06835) priA 1308455..1310308 (-) 1854 WP_146263285.1 primosomal protein N' -
  WHQ41_RS06840 (WHQ41_06840) Cj0683 1310290..1310727 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ41_RS06845 (WHQ41_06845) - 1310724..1310966 (-) 243 WP_002854947.1 hypothetical protein -
  WHQ41_RS06850 (WHQ41_06850) - 1310956..1311186 (-) 231 WP_002852327.1 hypothetical protein -
  WHQ41_RS06855 (WHQ41_06855) uvrB 1311340..1313313 (+) 1974 WP_002860008.1 excinuclease ABC subunit UvrB -
  WHQ41_RS06860 (WHQ41_06860) - 1313415..1314065 (-) 651 WP_338851100.1 DUF4118 domain-containing protein -
  WHQ41_RS06865 (WHQ41_06865) - 1314089..1315000 (-) 912 WP_317904366.1 hypothetical protein -
  WHQ41_RS06870 (WHQ41_06870) - 1314997..1315239 (-) 243 WP_240373516.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952839 WHQ41_RS06840 WP_002852324.1 1310290..1310727(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0058]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952839 WHQ41_RS06840 WP_002852324.1 1310290..1310727(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0058]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGTTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1