Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHQ41_RS04280 | Genome accession | NZ_CP148215 |
| Coordinates | 810612..811562 (-) | Length | 316 a.a. |
| NCBI ID | WP_002867402.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323CCJ0058 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 806974..840827 | 810612..811562 | within | 0 |
Gene organization within MGE regions
Location: 806974..840827
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHQ41_RS04260 (WHQ41_04260) | rfaD | 806974..807927 (+) | 954 | WP_234728994.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHQ41_RS04265 (WHQ41_04265) | rfaE1 | 807920..809305 (+) | 1386 | WP_002867399.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHQ41_RS04270 (WHQ41_04270) | gmhA | 809302..809862 (+) | 561 | WP_002867400.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHQ41_RS04275 (WHQ41_04275) | - | 809862..810626 (+) | 765 | WP_002867401.1 | glycosyltransferase family 25 protein | - |
| WHQ41_RS04280 (WHQ41_04280) | waaF | 810612..811562 (-) | 951 | WP_002867402.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHQ41_RS04285 (WHQ41_04285) | - | 811621..812442 (+) | 822 | WP_002867403.1 | glycosyltransferase family 2 protein | - |
| WHQ41_RS04290 (WHQ41_04290) | - | 812513..813469 (+) | 957 | WP_002867404.1 | UDP-glucuronic acid decarboxylase family protein | - |
| WHQ41_RS04295 (WHQ41_04295) | - | 813475..814776 (+) | 1302 | WP_338851171.1 | UDP-glucose/GDP-mannose dehydrogenase family protein | - |
| WHQ41_RS04300 (WHQ41_04300) | galE | 814773..815747 (+) | 975 | WP_146263329.1 | UDP-glucose 4-epimerase GalE | - |
| WHQ41_RS04305 (WHQ41_04305) | glf | 815749..816858 (+) | 1110 | WP_234728995.1 | UDP-galactopyranose mutase | - |
| WHQ41_RS04310 (WHQ41_04310) | - | 816941..817990 (+) | 1050 | WP_002867408.1 | glycosyltransferase | - |
| WHQ41_RS04315 (WHQ41_04315) | - | 817987..819039 (+) | 1053 | WP_100608349.1 | glycosyltransferase family 2 protein | - |
| WHQ41_RS04320 (WHQ41_04320) | - | 819224..819373 (+) | 150 | WP_052783150.1 | glycosyltransferase | - |
| WHQ41_RS04325 (WHQ41_04325) | - | 819534..820181 (+) | 648 | WP_234728996.1 | glycosyltransferase family 2 protein | - |
| WHQ41_RS04330 (WHQ41_04330) | - | 820259..821467 (+) | 1209 | WP_146263328.1 | glycosyltransferase family 2 protein | - |
| WHQ41_RS04335 (WHQ41_04335) | - | 821460..822347 (+) | 888 | WP_011049886.1 | glycosyltransferase family 2 protein | - |
| WHQ41_RS04340 (WHQ41_04340) | - | 822316..823866 (-) | 1551 | WP_002867216.1 | glycosyltransferase | - |
| WHQ41_RS04345 (WHQ41_04345) | htrB | 823863..824750 (-) | 888 | WP_002867215.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHQ41_RS04350 (WHQ41_04350) | waaC | 824740..825768 (-) | 1029 | WP_002859241.1 | lipopolysaccharide heptosyltransferase I | - |
| WHQ41_RS04355 (WHQ41_04355) | - | 825835..826629 (+) | 795 | WP_002860221.1 | 3'-5' exonuclease | - |
| WHQ41_RS04360 (WHQ41_04360) | galE | 826688..827674 (+) | 987 | WP_002867214.1 | UDP-glucose 4-epimerase GalE | - |
| WHQ41_RS04365 (WHQ41_04365) | pglK | 827668..829362 (+) | 1695 | WP_146263327.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHQ41_RS04370 (WHQ41_04370) | pglH | 829359..830438 (+) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHQ41_RS04375 (WHQ41_04375) | pglI | 830431..831360 (+) | 930 | WP_002854071.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHQ41_RS04380 (WHQ41_04380) | pglJ | 831348..832445 (+) | 1098 | WP_002853444.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| WHQ41_RS04385 (WHQ41_04385) | pglB | 832449..834590 (+) | 2142 | WP_338851172.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| WHQ41_RS04390 (WHQ41_04390) | pglA | 834600..835730 (+) | 1131 | WP_338851173.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| WHQ41_RS04395 (WHQ41_04395) | pglC | 835723..836325 (+) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| WHQ41_RS04400 (WHQ41_04400) | pglD | 836312..836902 (+) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| WHQ41_RS04405 (WHQ41_04405) | pglE | 837000..838160 (+) | 1161 | WP_146263325.1 | UDP-N-acetylbacillosamine transaminase | - |
| WHQ41_RS04410 (WHQ41_04410) | pglF | 838162..839934 (+) | 1773 | WP_052791641.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| WHQ41_RS04415 (WHQ41_04415) | pglG | 839934..840827 (+) | 894 | WP_002856519.1 | PDC sensor domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36324.91 Da Isoelectric Point: 10.3207
>NTDB_id=952834 WHQ41_RS04280 WP_002867402.1 810612..811562(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0058]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
Nucleotide
Download Length: 951 bp
>NTDB_id=952834 WHQ41_RS04280 WP_002867402.1 810612..811562(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0058]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.652 |
99.051 |
0.918 |