Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHQ12_RS03130 Genome accession   NZ_CP148213
Coordinates   582021..582458 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577021..587458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS03115 (WHQ12_03115) ispG 577577..578650 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  WHQ12_RS03120 (WHQ12_03120) cipA 578796..580176 (+) 1381 Protein_607 DUF2972 domain-containing protein -
  WHQ12_RS03125 (WHQ12_03125) priA 580186..582039 (-) 1854 WP_146263285.1 primosomal protein N' -
  WHQ12_RS03130 (WHQ12_03130) Cj0683 582021..582458 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ12_RS03135 (WHQ12_03135) - 582455..582697 (-) 243 WP_002854947.1 hypothetical protein -
  WHQ12_RS03140 (WHQ12_03140) - 582687..582917 (-) 231 WP_002852327.1 hypothetical protein -
  WHQ12_RS03145 (WHQ12_03145) uvrB 583071..585044 (+) 1974 WP_002860008.1 excinuclease ABC subunit UvrB -
  WHQ12_RS03150 (WHQ12_03150) - 585146..585796 (-) 651 WP_338851100.1 DUF4118 domain-containing protein -
  WHQ12_RS03155 (WHQ12_03155) - 585820..586731 (-) 912 WP_317904366.1 hypothetical protein -
  WHQ12_RS03160 (WHQ12_03160) - 586728..586970 (-) 243 WP_240373516.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952766 WHQ12_RS03130 WP_002852324.1 582021..582458(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0062]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952766 WHQ12_RS03130 WP_002852324.1 582021..582458(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0062]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGTTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1