Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   WHQ15_RS02545 Genome accession   NZ_CP148209
Coordinates   476196..477755 (+) Length   519 a.a.
NCBI ID   WP_020836902.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0065     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471196..482755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ15_RS02525 (WHQ15_02525) ctsR 473313..473624 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHQ15_RS02530 (WHQ15_02530) ctsD 473602..475014 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ15_RS02535 (WHQ15_02535) ctsP 475007..475615 (+) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHQ15_RS02540 (WHQ15_02540) ctsX 475619..476206 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHQ15_RS02545 (WHQ15_02545) ctsE 476196..477755 (+) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  WHQ15_RS02550 (WHQ15_02550) ctsF 477752..478933 (+) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  WHQ15_RS02555 (WHQ15_02555) - 478920..479690 (-) 771 WP_002873601.1 TSUP family transporter -
  WHQ15_RS02560 (WHQ15_02560) - 479694..480458 (-) 765 WP_002868230.1 TIGR02757 family protein -
  WHQ15_RS02565 (WHQ15_02565) flgK 480475..482301 (-) 1827 WP_002873603.1 flagellar hook-associated protein FlgK -
  WHQ15_RS02570 (WHQ15_02570) - 482311..482745 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60118.88 Da        Isoelectric Point: 5.6851

>NTDB_id=952715 WHQ15_RS02545 WP_020836902.1 476196..477755(+) (ctsE) [Campylobacter jejuni strain Z1323CCJ0065]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=952715 WHQ15_RS02545 WP_020836902.1 476196..477755(+) (ctsE) [Campylobacter jejuni strain Z1323CCJ0065]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAACAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGTATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAGGCAAGAAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAGCTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.807

100

0.998