Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FR_RS03105 Genome accession   NZ_CP172379
Coordinates   592512..592895 (+) Length   127 a.a.
NCBI ID   WP_002871352.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 587512..597895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FR_RS03085 (ACH6FR_03085) - 587591..589525 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  ACH6FR_RS03090 (ACH6FR_03090) ilvC 589644..590666 (+) 1023 WP_052789874.1 ketol-acid reductoisomerase -
  ACH6FR_RS03095 (ACH6FR_03095) - 590670..591752 (+) 1083 WP_002888479.1 divergent polysaccharide deacetylase family protein -
  ACH6FR_RS03100 (ACH6FR_03100) dprA 591742..592515 (+) 774 WP_002888477.1 DNA-processing protein DprA Machinery gene
  ACH6FR_RS03105 (ACH6FR_03105) dprB 592512..592895 (+) 384 WP_002871352.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FR_RS03110 (ACH6FR_03110) - 592924..593763 (+) 840 WP_079263723.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FR_RS03115 (ACH6FR_03115) msrA 593939..594436 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FR_RS03120 (ACH6FR_03120) ppa 594478..594996 (-) 519 WP_002855031.1 inorganic diphosphatase -
  ACH6FR_RS03125 (ACH6FR_03125) adk 595006..595584 (-) 579 WP_002855137.1 adenylate kinase -
  ACH6FR_RS03130 (ACH6FR_03130) aspS 595581..597332 (-) 1752 WP_002888472.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14146.63 Da        Isoelectric Point: 9.0848

>NTDB_id=952708 ACH6FR_RS03105 WP_002871352.1 592512..592895(+) (dprB) [Campylobacter jejuni strain YH013]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952708 ACH6FR_RS03105 WP_002871352.1 592512..592895(+) (dprB) [Campylobacter jejuni strain YH013]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGAATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457