Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   WHP58_RS08775 Genome accession   NZ_CP148206
Coordinates   1650587..1651771 (+) Length   394 a.a.
NCBI ID   WP_002890768.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0066     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1645587..1656771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP58_RS08755 (WHP58_08755) - 1646657..1647259 (+) 603 WP_002860377.1 gamma-glutamyl-CDP-amidate hydrolase -
  WHP58_RS08760 (WHP58_08760) - 1647261..1648022 (+) 762 WP_002875234.1 CTP:phosphoglutamine cytidylyltransferase -
  WHP58_RS08765 (WHP58_08765) cysC 1648012..1648524 (+) 513 WP_002818256.1 cytidine diphosphoramidate kinase -
  WHP58_RS08770 (WHP58_08770) kpsC 1648521..1650590 (+) 2070 WP_052823183.1 capsular polysaccharide biosynthesis protein -
  WHP58_RS08775 (WHP58_08775) kpsS 1650587..1651771 (+) 1185 WP_002890768.1 capsule polysaccharide modification protein KpsS Regulator
  WHP58_RS08780 (WHP58_08780) - 1651844..1652965 (+) 1122 WP_002890766.1 hypothetical protein -
  WHP58_RS08785 (WHP58_08785) - 1652962..1654323 (+) 1362 WP_002860383.1 cytochrome P450 -
  WHP58_RS08790 (WHP58_08790) - 1654320..1654739 (+) 420 WP_002855518.1 hypothetical protein -
  WHP58_RS08795 (WHP58_08795) acpS 1654740..1655087 (-) 348 WP_002825806.1 holo-ACP synthase -
  WHP58_RS08800 (WHP58_08800) fliL 1655087..1655623 (-) 537 WP_002855429.1 flagellar basal body-associated protein FliL -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46854.60 Da        Isoelectric Point: 9.9369

>NTDB_id=952702 WHP58_RS08775 WP_002890768.1 1650587..1651771(+) (kpsS) [Campylobacter jejuni strain Z1323CCJ0066]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=952702 WHP58_RS08775 WP_002890768.1 1650587..1651771(+) (kpsS) [Campylobacter jejuni strain Z1323CCJ0066]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATACTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98