Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ACH6FM_RS09130 Genome accession   NZ_CP172376
Coordinates   1720612..1722510 (+) Length   632 a.a.
NCBI ID   WP_002870242.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1715612..1727510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FM_RS09100 (ACH6FM_09095) - 1716265..1716537 (+) 273 WP_002858971.1 NifU family protein -
  ACH6FM_RS09105 (ACH6FM_09100) - 1716524..1717087 (+) 564 WP_002914268.1 hypothetical protein -
  ACH6FM_RS09110 (ACH6FM_09105) murE 1717071..1718354 (+) 1284 WP_002870245.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  ACH6FM_RS09115 (ACH6FM_09110) - 1718358..1718669 (+) 312 WP_002870244.1 YbaB/EbfC family nucleoid-associated protein -
  ACH6FM_RS09120 (ACH6FM_09115) - 1718666..1719760 (+) 1095 WP_002870243.1 PDZ domain-containing protein -
  ACH6FM_RS09125 (ACH6FM_09120) ispA 1719757..1720602 (+) 846 WP_002851379.1 polyprenyl synthetase family protein -
  ACH6FM_RS09130 (ACH6FM_09125) recP/tkt 1720612..1722510 (+) 1899 WP_002870242.1 transketolase Machinery gene
  ACH6FM_RS09135 (ACH6FM_09130) iamB 1722512..1723621 (+) 1110 WP_002867544.1 ABC transporter permease -
  ACH6FM_RS09140 (ACH6FM_09135) iamA 1723622..1724344 (+) 723 WP_002860093.1 ABC transporter ATP-binding protein -
  ACH6FM_RS09145 (ACH6FM_09140) - 1724347..1725237 (+) 891 WP_002860094.1 MlaD family protein -
  ACH6FM_RS09150 (ACH6FM_09145) - 1725237..1725836 (+) 600 WP_002870109.1 ABC-type transport auxiliary lipoprotein family protein -
  ACH6FM_RS09155 (ACH6FM_09150) - 1725892..1726392 (+) 501 WP_002858979.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69579.39 Da        Isoelectric Point: 6.2854

>NTDB_id=952694 ACH6FM_RS09130 WP_002870242.1 1720612..1722510(+) (recP/tkt) [Campylobacter jejuni strain YH014]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKICFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFLLSRQKLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=952694 ACH6FM_RS09130 WP_002870242.1 1720612..1722510(+) (recP/tkt) [Campylobacter jejuni strain YH014]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCTGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCCA
CTTGGCTAAACCGCGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGCGGC
TATGACTTAAGCTTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCTGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTTATTTATGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGTGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCTGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGCTA
TTAAATCCTGATTTTAACAAGATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCAGACTTAGGCCCTTCGAATAAAACAGAACTTC
ACAGTATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTCTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTGTTTTTGGAGATGTAAAAAATGGAGCGTATTTACTCAAAGAAAGCAAAGAGGCTAAATTTACACTTTTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTTTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCCATAAAGTGTATGGCATAGAAAGTTTTGGAGAAAGTGGCAAAGACAAAGATG
TGTTTGAACACTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, C-terminal domain (Transketolase_C)

(521-623)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.586

100

0.416