Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHP75_RS06080 | Genome accession | NZ_CP148203 |
| Coordinates | 1140740..1141690 (+) | Length | 316 a.a. |
| NCBI ID | WP_002872238.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323CCJ0069 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1120947..1154676 | 1140740..1141690 | within | 0 |
Gene organization within MGE regions
Location: 1120947..1154676
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP75_RS05980 (WHP75_05980) | pglI | 1120947..1121876 (-) | 930 | WP_070289983.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHP75_RS05985 (WHP75_05985) | pglH | 1121869..1122948 (-) | 1080 | WP_079463203.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHP75_RS05990 (WHP75_05990) | pglK | 1122945..1124639 (-) | 1695 | WP_010790902.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHP75_RS05995 (WHP75_05995) | galE | 1124633..1125619 (-) | 987 | WP_070289985.1 | UDP-glucose 4-epimerase GalE | - |
| WHP75_RS06000 (WHP75_06000) | - | 1125677..1126471 (-) | 795 | WP_070289987.1 | 3'-5' exonuclease | - |
| WHP75_RS06005 (WHP75_06005) | waaC | 1126537..1127565 (+) | 1029 | WP_218991345.1 | lipopolysaccharide heptosyltransferase I | - |
| WHP75_RS06010 (WHP75_06010) | htrB | 1127555..1128442 (+) | 888 | WP_214137181.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| WHP75_RS06015 (WHP75_06015) | - | 1128439..1129989 (+) | 1551 | WP_100609518.1 | glycosyltransferase | - |
| WHP75_RS06020 (WHP75_06020) | - | 1129958..1130845 (-) | 888 | WP_100609520.1 | glycosyltransferase family 2 protein | - |
| WHP75_RS06025 (WHP75_06025) | - | 1130838..1132046 (-) | 1209 | WP_338877681.1 | glycosyltransferase | - |
| WHP75_RS06030 (WHP75_06030) | - | 1132124..1132771 (-) | 648 | WP_234728996.1 | glycosyltransferase family 2 protein | - |
| WHP75_RS06035 (WHP75_06035) | - | 1132806..1133006 (-) | 201 | WP_337924673.1 | glycosyltransferase | - |
| WHP75_RS06040 (WHP75_06040) | - | 1132993..1133082 (-) | 90 | WP_002873960.1 | glycosyltransferase | - |
| WHP75_RS06045 (WHP75_06045) | - | 1133266..1134318 (-) | 1053 | WP_079462092.1 | glycosyltransferase family 2 protein | - |
| WHP75_RS06050 (WHP75_06050) | - | 1134315..1135364 (-) | 1050 | WP_052781716.1 | glycosyltransferase | - |
| WHP75_RS06055 (WHP75_06055) | glf | 1135447..1136556 (-) | 1110 | WP_002873541.1 | UDP-galactopyranose mutase | - |
| WHP75_RS06060 (WHP75_06060) | galE | 1136558..1137532 (-) | 975 | WP_100609522.1 | UDP-glucose 4-epimerase GalE | - |
| WHP75_RS06065 (WHP75_06065) | - | 1137529..1138827 (-) | 1299 | WP_338877682.1 | UDP-glucose/GDP-mannose dehydrogenase family protein | - |
| WHP75_RS06070 (WHP75_06070) | - | 1138833..1139789 (-) | 957 | WP_002873538.1 | UDP-glucuronic acid decarboxylase family protein | - |
| WHP75_RS06075 (WHP75_06075) | - | 1139860..1140681 (-) | 822 | WP_002873537.1 | glycosyltransferase family 2 protein | - |
| WHP75_RS06080 (WHP75_06080) | waaF | 1140740..1141690 (+) | 951 | WP_002872238.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHP75_RS06085 (WHP75_06085) | - | 1141676..1142440 (-) | 765 | WP_002872239.1 | glycosyltransferase family 25 protein | - |
| WHP75_RS06090 (WHP75_06090) | gmhA | 1142440..1143000 (-) | 561 | WP_002842583.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHP75_RS06095 (WHP75_06095) | rfaE1 | 1142997..1144382 (-) | 1386 | WP_070290007.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHP75_RS06100 (WHP75_06100) | rfaD | 1144375..1145328 (-) | 954 | WP_002853798.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHP75_RS06105 (WHP75_06105) | gmhB | 1145329..1145889 (-) | 561 | WP_002853963.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| WHP75_RS06110 (WHP75_06110) | - | 1145971..1146273 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| WHP75_RS06115 (WHP75_06115) | ccoS | 1146296..1146502 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| WHP75_RS06120 (WHP75_06120) | - | 1146499..1148856 (-) | 2358 | WP_079742628.1 | heavy metal translocating P-type ATPase | - |
| WHP75_RS06125 (WHP75_06125) | rho | 1148965..1150263 (+) | 1299 | WP_070290009.1 | transcription termination factor Rho | - |
| WHP75_RS06130 (WHP75_06130) | dnaX | 1150267..1151793 (+) | 1527 | WP_070290010.1 | DNA polymerase III subunit gamma/tau | - |
| WHP75_RS06135 (WHP75_06135) | - | 1151790..1152311 (-) | 522 | Protein_1189 | DUF2165 family protein | - |
| WHP75_RS06140 (WHP75_06140) | copA | 1152383..1154482 (-) | 2100 | WP_002875419.1 | copper-translocating P-type ATPase CopA | - |
| WHP75_RS06145 (WHP75_06145) | - | 1154482..1154676 (-) | 195 | WP_002852760.1 | cation transporter | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36305.91 Da Isoelectric Point: 10.3316
>NTDB_id=952663 WHP75_RS06080 WP_002872238.1 1140740..1141690(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0069]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=952663 WHP75_RS06080 WP_002872238.1 1140740..1141690(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0069]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCACGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACGAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCACGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.994 |
99.367 |
0.924 |