Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FM_RS03300 Genome accession   NZ_CP172376
Coordinates   613156..613539 (+) Length   127 a.a.
NCBI ID   WP_395766551.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 608156..618539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FM_RS03280 (ACH6FM_03280) - 608235..610169 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  ACH6FM_RS03285 (ACH6FM_03285) ilvC 610288..611310 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  ACH6FM_RS03290 (ACH6FM_03290) - 611314..612396 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  ACH6FM_RS03295 (ACH6FM_03295) dprA 612386..613159 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  ACH6FM_RS03300 (ACH6FM_03300) dprB 613156..613539 (+) 384 WP_395766551.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FM_RS03305 (ACH6FM_03305) - 613568..614407 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FM_RS03310 (ACH6FM_03310) msrA 614582..615079 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FM_RS03315 (ACH6FM_03315) ppa 615121..615639 (-) 519 WP_002867724.1 inorganic diphosphatase -
  ACH6FM_RS03320 (ACH6FM_03320) adk 615649..616227 (-) 579 WP_002859580.1 adenylate kinase -
  ACH6FM_RS03325 (ACH6FM_03325) aspS 616224..617975 (-) 1752 WP_002908827.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14187.73 Da        Isoelectric Point: 9.8358

>NTDB_id=952662 ACH6FM_RS03300 WP_395766551.1 613156..613539(+) (dprB) [Campylobacter jejuni strain YH014]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESRTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952662 ACH6FM_RS03300 WP_395766551.1 613156..613539(+) (dprB) [Campylobacter jejuni strain YH014]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCAGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457