Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6FX_RS03140 Genome accession   NZ_CP172375
Coordinates   598544..599317 (+) Length   257 a.a.
NCBI ID   WP_002919848.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH017     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 593544..604317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FX_RS03125 (ACH6FX_03125) - 594411..596345 (-) 1935 WP_002919846.1 ribonuclease R family protein -
  ACH6FX_RS03130 (ACH6FX_03130) ilvC 596464..597486 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  ACH6FX_RS03135 (ACH6FX_03135) - 597490..598554 (+) 1065 WP_071615818.1 divergent polysaccharide deacetylase family protein -
  ACH6FX_RS03140 (ACH6FX_03140) dprA 598544..599317 (+) 774 WP_002919848.1 DNA-processing protein DprA Machinery gene
  ACH6FX_RS03145 (ACH6FX_03145) dprB 599314..599697 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FX_RS03150 (ACH6FX_03150) - 599726..600565 (+) 840 WP_079263941.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FX_RS03155 (ACH6FX_03155) msrA 600741..601238 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FX_RS03160 (ACH6FX_03160) ppa 601279..601797 (-) 519 WP_002855031.1 inorganic diphosphatase -
  ACH6FX_RS03165 (ACH6FX_03165) adk 601807..602385 (-) 579 WP_002855137.1 adenylate kinase -
  ACH6FX_RS03170 (ACH6FX_03170) aspS 602382..604133 (-) 1752 WP_002919852.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28830.64 Da        Isoelectric Point: 7.0853

>NTDB_id=952614 ACH6FX_RS03140 WP_002919848.1 598544..599317(+) (dprA) [Campylobacter jejuni strain YH017]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYEQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=952614 ACH6FX_RS03140 WP_002919848.1 598544..599317(+) (dprA) [Campylobacter jejuni strain YH017]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGAACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

48.75

93.385

0.455