Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | WHP47_RS05550 | Genome accession | NZ_CP148199 |
| Coordinates | 1050455..1050757 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain Z1323CCJ0072 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1045455..1055757
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP47_RS05525 (WHP47_05525) | rpsR | 1045818..1046078 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| WHP47_RS05530 (WHP47_05530) | lon | 1046138..1048513 (-) | 2376 | WP_002853487.1 | endopeptidase La | - |
| WHP47_RS05535 (WHP47_05535) | - | 1048530..1049177 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| WHP47_RS05540 (WHP47_05540) | fliW | 1049338..1049727 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| WHP47_RS05545 (WHP47_05545) | proC | 1049727..1050458 (+) | 732 | WP_002864259.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| WHP47_RS05550 (WHP47_05550) | ctsT | 1050455..1050757 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| WHP47_RS05555 (WHP47_05555) | - | 1050754..1051416 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| WHP47_RS05560 (WHP47_05560) | - | 1051413..1051865 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| WHP47_RS05565 (WHP47_05565) | hemD | 1051862..1052491 (-) | 630 | WP_002878794.1 | uroporphyrinogen-III synthase | - |
| WHP47_RS05570 (WHP47_05570) | thiE | 1052469..1053101 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| WHP47_RS05575 (WHP47_05575) | thiD | 1053091..1053903 (-) | 813 | WP_002890078.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| WHP47_RS05580 (WHP47_05580) | - | 1053900..1054586 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| WHP47_RS05585 (WHP47_05585) | - | 1054583..1055344 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=952607 WHP47_RS05550 WP_002853046.1 1050455..1050757(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0072]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=952607 WHP47_RS05550 WP_002853046.1 1050455..1050757(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0072]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |