Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHP85_RS07000 | Genome accession | NZ_CP148197 |
| Coordinates | 1336212..1337171 (+) | Length | 319 a.a. |
| NCBI ID | WP_002875425.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323CCJ0073 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1316525..1346507 | 1336212..1337171 | within | 0 |
Gene organization within MGE regions
Location: 1316525..1346507
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP85_RS06905 (WHP85_06905) | pglI | 1316525..1317454 (-) | 930 | WP_002890470.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHP85_RS06910 (WHP85_06910) | pglH | 1317447..1318526 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHP85_RS06915 (WHP85_06915) | pglK | 1318523..1320217 (-) | 1695 | WP_002890469.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHP85_RS06920 (WHP85_06920) | galE | 1320211..1321197 (-) | 987 | WP_002853529.1 | UDP-glucose 4-epimerase GalE | - |
| WHP85_RS06925 (WHP85_06925) | - | 1321255..1322049 (-) | 795 | WP_002853812.1 | 3'-5' exonuclease | - |
| WHP85_RS06930 (WHP85_06930) | waaC | 1322115..1323143 (+) | 1029 | WP_002855693.1 | lipopolysaccharide heptosyltransferase I | - |
| WHP85_RS06935 (WHP85_06935) | htrB | 1323133..1324020 (+) | 888 | WP_002890465.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHP85_RS06940 (WHP85_06940) | - | 1324017..1325564 (+) | 1548 | WP_002858148.1 | glycosyltransferase | - |
| WHP85_RS06945 (WHP85_06945) | - | 1325568..1326740 (+) | 1173 | WP_002858013.1 | glycosyltransferase family 2 protein | - |
| WHP85_RS06950 (WHP85_06950) | - | 1326724..1327719 (-) | 996 | WP_002858358.1 | capsular polysaccharide synthesis protein | - |
| WHP85_RS06955 (WHP85_06955) | - | 1327777..1328925 (+) | 1149 | WP_338877971.1 | glycosyltransferase family 2 protein | - |
| WHP85_RS06960 (WHP85_06960) | wlaN | 1328914..1329825 (-) | 912 | WP_002858039.1 | beta-1,3 galactosyltransferase | - |
| WHP85_RS06965 (WHP85_06965) | cstIII | 1329880..1330764 (+) | 885 | WP_002858290.1 | alpha-2,3-sialyltransferase | - |
| WHP85_RS06970 (WHP85_06970) | neuB1 | 1330745..1331776 (+) | 1032 | WP_002858213.1 | sialic acid synthase | - |
| WHP85_RS06975 (WHP85_06975) | neuC | 1331773..1332888 (+) | 1116 | WP_002858400.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| WHP85_RS06980 (WHP85_06980) | - | 1332885..1333751 (+) | 867 | Protein_1344 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| WHP85_RS06985 (WHP85_06985) | - | 1333833..1334495 (+) | 663 | WP_002881429.1 | N-acylneuraminate cytidylyltransferase | - |
| WHP85_RS06990 (WHP85_06990) | - | 1334490..1335345 (-) | 856 | Protein_1346 | glycosyltransferase | - |
| WHP85_RS06995 (WHP85_06995) | waaV | 1335329..1336153 (-) | 825 | WP_002858096.1 | glycosyltransferase family 2 protein | - |
| WHP85_RS07000 (WHP85_07000) | waaF | 1336212..1337171 (+) | 960 | WP_002875425.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHP85_RS07005 (WHP85_07005) | gmhA | 1337152..1337712 (-) | 561 | WP_002858021.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHP85_RS07010 (WHP85_07010) | rfaE1 | 1337709..1339094 (-) | 1386 | WP_002890180.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHP85_RS07015 (WHP85_07015) | rfaD | 1339087..1340040 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHP85_RS07020 (WHP85_07020) | gmhB | 1340041..1340601 (-) | 561 | WP_052782596.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| WHP85_RS07025 (WHP85_07025) | - | 1340682..1340984 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| WHP85_RS07030 (WHP85_07030) | ccoS | 1341007..1341213 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| WHP85_RS07035 (WHP85_07035) | - | 1341210..1343567 (-) | 2358 | WP_074471057.1 | heavy metal translocating P-type ATPase | - |
| WHP85_RS07040 (WHP85_07040) | rho | 1343676..1344974 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| WHP85_RS07045 (WHP85_07045) | dnaX | 1344978..1346507 (+) | 1530 | WP_002875420.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36734.30 Da Isoelectric Point: 10.2412
>NTDB_id=952589 WHP85_RS07000 WP_002875425.1 1336212..1337171(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0073]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=952589 WHP85_RS07000 WP_002875425.1 1336212..1337171(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0073]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
100 |
100 |
1 |