Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHP67_RS08535 | Genome accession | NZ_CP148195 |
| Coordinates | 1613049..1614008 (-) | Length | 319 a.a. |
| NCBI ID | WP_002875425.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323CCJ0074 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1603713..1633693 | 1613049..1614008 | within | 0 |
Gene organization within MGE regions
Location: 1603713..1633693
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP67_RS08490 (WHP67_08490) | dnaX | 1603713..1605242 (-) | 1530 | WP_002875420.1 | DNA polymerase III subunit gamma/tau | - |
| WHP67_RS08495 (WHP67_08495) | rho | 1605246..1606544 (-) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| WHP67_RS08500 (WHP67_08500) | - | 1606653..1609010 (+) | 2358 | WP_074471057.1 | heavy metal translocating P-type ATPase | - |
| WHP67_RS08505 (WHP67_08505) | ccoS | 1609007..1609213 (+) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| WHP67_RS08510 (WHP67_08510) | - | 1609236..1609538 (-) | 303 | WP_002852762.1 | cytochrome c | - |
| WHP67_RS08515 (WHP67_08515) | gmhB | 1609619..1610179 (+) | 561 | WP_052782596.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| WHP67_RS08520 (WHP67_08520) | rfaD | 1610180..1611133 (+) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHP67_RS08525 (WHP67_08525) | rfaE1 | 1611126..1612511 (+) | 1386 | WP_002890180.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHP67_RS08530 (WHP67_08530) | gmhA | 1612508..1613068 (+) | 561 | WP_002858021.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHP67_RS08535 (WHP67_08535) | waaF | 1613049..1614008 (-) | 960 | WP_002875425.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHP67_RS08540 (WHP67_08540) | waaV | 1614067..1614891 (+) | 825 | WP_002858096.1 | glycosyltransferase family 2 protein | - |
| WHP67_RS08545 (WHP67_08545) | - | 1614875..1615727 (+) | 853 | Protein_1652 | glycosyltransferase | - |
| WHP67_RS08550 (WHP67_08550) | - | 1615722..1616384 (-) | 663 | WP_002881429.1 | N-acylneuraminate cytidylyltransferase | - |
| WHP67_RS08555 (WHP67_08555) | - | 1616418..1617332 (-) | 915 | Protein_1654 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| WHP67_RS08560 (WHP67_08560) | neuC | 1617329..1618444 (-) | 1116 | WP_002858400.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| WHP67_RS08565 (WHP67_08565) | neuB1 | 1618441..1619472 (-) | 1032 | WP_002858213.1 | sialic acid synthase | - |
| WHP67_RS08570 (WHP67_08570) | cstIII | 1619453..1620337 (-) | 885 | WP_002858290.1 | alpha-2,3-sialyltransferase | - |
| WHP67_RS08575 (WHP67_08575) | wlaN | 1620392..1621304 (+) | 913 | Protein_1658 | beta-1,3 galactosyltransferase | - |
| WHP67_RS08580 (WHP67_08580) | - | 1621293..1622441 (-) | 1149 | WP_338877971.1 | glycosyltransferase family 2 protein | - |
| WHP67_RS08585 (WHP67_08585) | - | 1622499..1623494 (+) | 996 | WP_002858358.1 | capsular polysaccharide synthesis protein | - |
| WHP67_RS08590 (WHP67_08590) | - | 1623478..1624650 (-) | 1173 | WP_002858013.1 | glycosyltransferase family 2 protein | - |
| WHP67_RS08595 (WHP67_08595) | - | 1624654..1626201 (-) | 1548 | WP_002858148.1 | glycosyltransferase | - |
| WHP67_RS08600 (WHP67_08600) | htrB | 1626198..1627085 (-) | 888 | WP_002890465.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHP67_RS08605 (WHP67_08605) | waaC | 1627075..1628103 (-) | 1029 | WP_002855693.1 | lipopolysaccharide heptosyltransferase I | - |
| WHP67_RS08610 (WHP67_08610) | - | 1628169..1628963 (+) | 795 | WP_002853812.1 | 3'-5' exonuclease | - |
| WHP67_RS08615 (WHP67_08615) | galE | 1629021..1630007 (+) | 987 | WP_002853529.1 | UDP-glucose 4-epimerase GalE | - |
| WHP67_RS08620 (WHP67_08620) | pglK | 1630001..1631695 (+) | 1695 | WP_002890469.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHP67_RS08625 (WHP67_08625) | pglH | 1631692..1632771 (+) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHP67_RS08630 (WHP67_08630) | pglI | 1632764..1633693 (+) | 930 | WP_002890470.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36734.30 Da Isoelectric Point: 10.2412
>NTDB_id=952566 WHP67_RS08535 WP_002875425.1 1613049..1614008(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0074]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=952566 WHP67_RS08535 WP_002875425.1 1613049..1614008(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0074]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
100 |
100 |
1 |