Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHP28_RS05635 | Genome accession | NZ_CP148193 |
| Coordinates | 1087401..1088360 (+) | Length | 319 a.a. |
| NCBI ID | WP_002875425.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323CCJ0075 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1067717..1097696 | 1087401..1088360 | within | 0 |
Gene organization within MGE regions
Location: 1067717..1097696
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP28_RS05540 (WHP28_05540) | pglI | 1067717..1068646 (-) | 930 | WP_002890470.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHP28_RS05545 (WHP28_05545) | pglH | 1068639..1069718 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHP28_RS05550 (WHP28_05550) | pglK | 1069715..1071409 (-) | 1695 | WP_002890469.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHP28_RS05555 (WHP28_05555) | galE | 1071403..1072389 (-) | 987 | WP_002853529.1 | UDP-glucose 4-epimerase GalE | - |
| WHP28_RS05560 (WHP28_05560) | - | 1072447..1073241 (-) | 795 | WP_002853812.1 | 3'-5' exonuclease | - |
| WHP28_RS05565 (WHP28_05565) | waaC | 1073307..1074335 (+) | 1029 | WP_002855693.1 | lipopolysaccharide heptosyltransferase I | - |
| WHP28_RS05570 (WHP28_05570) | htrB | 1074325..1075212 (+) | 888 | WP_002890465.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHP28_RS05575 (WHP28_05575) | - | 1075209..1076756 (+) | 1548 | WP_002858148.1 | glycosyltransferase | - |
| WHP28_RS05580 (WHP28_05580) | - | 1076760..1077932 (+) | 1173 | WP_002858013.1 | glycosyltransferase family 2 protein | - |
| WHP28_RS05585 (WHP28_05585) | - | 1077916..1078911 (-) | 996 | WP_002858358.1 | capsular polysaccharide synthesis protein | - |
| WHP28_RS05590 (WHP28_05590) | - | 1078969..1080117 (+) | 1149 | WP_338877971.1 | glycosyltransferase family 2 protein | - |
| WHP28_RS05595 (WHP28_05595) | wlaN | 1080106..1081018 (-) | 913 | Protein_1081 | beta-1,3 galactosyltransferase | - |
| WHP28_RS05600 (WHP28_05600) | cstIII | 1081073..1081957 (+) | 885 | WP_002858290.1 | alpha-2,3-sialyltransferase | - |
| WHP28_RS05605 (WHP28_05605) | neuB1 | 1081938..1082969 (+) | 1032 | WP_002858213.1 | sialic acid synthase | - |
| WHP28_RS05610 (WHP28_05610) | neuC | 1082966..1084081 (+) | 1116 | WP_002858400.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| WHP28_RS05615 (WHP28_05615) | - | 1084078..1084992 (+) | 915 | Protein_1085 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| WHP28_RS05620 (WHP28_05620) | - | 1085026..1085688 (+) | 663 | WP_002881429.1 | N-acylneuraminate cytidylyltransferase | - |
| WHP28_RS05625 (WHP28_05625) | - | 1085683..1086534 (-) | 852 | WP_014516804.1 | glycosyltransferase | - |
| WHP28_RS05630 (WHP28_05630) | waaV | 1086518..1087342 (-) | 825 | WP_002858096.1 | glycosyltransferase family 2 protein | - |
| WHP28_RS05635 (WHP28_05635) | waaF | 1087401..1088360 (+) | 960 | WP_002875425.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHP28_RS05640 (WHP28_05640) | gmhA | 1088341..1088901 (-) | 561 | WP_002858021.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHP28_RS05645 (WHP28_05645) | rfaE1 | 1088898..1090283 (-) | 1386 | WP_002890180.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHP28_RS05650 (WHP28_05650) | rfaD | 1090276..1091229 (-) | 954 | WP_002852832.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHP28_RS05655 (WHP28_05655) | gmhB | 1091230..1091790 (-) | 561 | WP_052782596.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| WHP28_RS05660 (WHP28_05660) | - | 1091871..1092173 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| WHP28_RS05665 (WHP28_05665) | ccoS | 1092196..1092402 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| WHP28_RS05670 (WHP28_05670) | - | 1092399..1094756 (-) | 2358 | WP_074471057.1 | heavy metal translocating P-type ATPase | - |
| WHP28_RS05675 (WHP28_05675) | rho | 1094865..1096163 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| WHP28_RS05680 (WHP28_05680) | dnaX | 1096167..1097696 (+) | 1530 | WP_002875420.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36734.30 Da Isoelectric Point: 10.2412
>NTDB_id=952527 WHP28_RS05635 WP_002875425.1 1087401..1088360(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0075]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=952527 WHP28_RS05635 WP_002875425.1 1087401..1088360(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0075]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
100 |
100 |
1 |