Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | WHP28_RS05285 | Genome accession | NZ_CP148193 |
| Coordinates | 1017246..1017548 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain Z1323CCJ0075 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1012246..1022548
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP28_RS05260 (WHP28_05260) | rpsR | 1012609..1012869 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| WHP28_RS05265 (WHP28_05265) | lon | 1012929..1015304 (-) | 2376 | WP_002853487.1 | endopeptidase La | - |
| WHP28_RS05270 (WHP28_05270) | - | 1015321..1015968 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| WHP28_RS05275 (WHP28_05275) | fliW | 1016129..1016518 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| WHP28_RS05280 (WHP28_05280) | proC | 1016518..1017249 (+) | 732 | WP_002864259.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| WHP28_RS05285 (WHP28_05285) | ctsT | 1017246..1017548 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| WHP28_RS05290 (WHP28_05290) | - | 1017545..1018207 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| WHP28_RS05295 (WHP28_05295) | - | 1018204..1018656 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| WHP28_RS05300 (WHP28_05300) | hemD | 1018653..1019282 (-) | 630 | WP_002878794.1 | uroporphyrinogen-III synthase | - |
| WHP28_RS05305 (WHP28_05305) | thiE | 1019260..1019892 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| WHP28_RS05310 (WHP28_05310) | thiD | 1019882..1020694 (-) | 813 | WP_002890078.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| WHP28_RS05315 (WHP28_05315) | - | 1020691..1021377 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| WHP28_RS05320 (WHP28_05320) | - | 1021374..1022135 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=952525 WHP28_RS05285 WP_002853046.1 1017246..1017548(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0075]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=952525 WHP28_RS05285 WP_002853046.1 1017246..1017548(+) (ctsT) [Campylobacter jejuni strain Z1323CCJ0075]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |