Detailed information NTG0952495

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: WHQ27_RS03560
• Genome accession: NZ_CP148192
• Coordinates: 688123..689082 (+)
• Length: 319 a.a.
• NCBI ID: WP_002875425.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain Z1323CCJ0078
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 683123..694082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHQ27_RS03535 (WHQ27_03535)	neuC	683688..684803 (+)	1116	WP_002858400.1	UDP-N-acetylglucosamine 2-epimerase	-
WHQ27_RS03540 (WHQ27_03540)	-	684800..685714 (+)	915	Protein_677	beta-1,4-N-acetylgalactosaminyltransferase	-
WHQ27_RS03545 (WHQ27_03545)	-	685748..686410 (+)	663	WP_002881429.1	N-acylneuraminate cytidylyltransferase	-
WHQ27_RS03550 (WHQ27_03550)	-	686405..687256 (-)	852	Protein_679	glycosyltransferase	-
WHQ27_RS03555 (WHQ27_03555)	waaV	687240..688064 (-)	825	WP_002858096.1	glycosyltransferase family 2 protein	-
WHQ27_RS03560 (WHQ27_03560)	waaF	688123..689082 (+)	960	WP_002875425.1	lipopolysaccharide heptosyltransferase II	Regulator
WHQ27_RS03565 (WHQ27_03565)	gmhA	689063..689623 (-)	561	WP_002858021.1	D-sedoheptulose 7-phosphate isomerase	-
WHQ27_RS03570 (WHQ27_03570)	rfaE1	689620..691005 (-)	1386	WP_002858114.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
WHQ27_RS03575 (WHQ27_03575)	rfaD	690998..691951 (-)	954	WP_002858041.1	ADP-glyceromanno-heptose 6-epimerase	-
WHQ27_RS03580 (WHQ27_03580)	gmhB	691952..692512 (-)	561	WP_002853963.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
WHQ27_RS03585 (WHQ27_03585)	-	692594..692896 (+)	303	WP_002852762.1	cytochrome c	-
WHQ27_RS03590 (WHQ27_03590)	ccoS	692919..693125 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36734.30 Da
• Isoelectric Point: 10.2412

>NTDB_id=952495 WHQ27_RS03560 WP_002875425.1 688123..689082(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0078]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=952495 WHQ27_RS03560 WP_002875425.1 688123..689082(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0078]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	100	100	1