Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHQ29_RS07280 Genome accession   NZ_CP148190
Coordinates   1406061..1406498 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1401061..1411498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS07265 (WHQ29_07265) ispG 1401633..1402706 (-) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  WHQ29_RS07270 (WHQ29_07270) cipA 1402854..1404216 (+) 1363 Protein_1406 DUF2972 domain-containing protein -
  WHQ29_RS07275 (WHQ29_07275) priA 1404226..1406079 (-) 1854 WP_002852169.1 primosomal protein N' -
  WHQ29_RS07280 (WHQ29_07280) Cj0683 1406061..1406498 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ29_RS07285 (WHQ29_07285) - 1406495..1406737 (-) 243 WP_002854947.1 hypothetical protein -
  WHQ29_RS07290 (WHQ29_07290) - 1406727..1406957 (-) 231 WP_002852327.1 hypothetical protein -
  WHQ29_RS07295 (WHQ29_07295) uvrB 1407111..1409084 (+) 1974 WP_052823167.1 excinuclease ABC subunit UvrB -
  WHQ29_RS07300 (WHQ29_07300) kdpD 1409186..1411006 (-) 1821 WP_002858538.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952485 WHQ29_RS07280 WP_002852324.1 1406061..1406498(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0080]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952485 WHQ29_RS07280 WP_002852324.1 1406061..1406498(-) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0080]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1