Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHQ29_RS03985 Genome accession   NZ_CP148190
Coordinates   759576..760544 (-) Length   322 a.a.
NCBI ID   WP_002872671.1    Uniprot ID   Q0P8Q7
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754576..765544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS03960 (WHQ29_03960) - 756108..756662 (+) 555 WP_002855904.1 membrane protein -
  WHQ29_RS03970 (WHQ29_03970) ceuB 756888..757880 (-) 993 WP_002852385.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHQ29_RS03975 (WHQ29_03975) ceuD 757893..758648 (-) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  WHQ29_RS03980 (WHQ29_03980) ceuC 758645..759583 (-) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  WHQ29_RS03985 (WHQ29_03985) ceuB 759576..760544 (-) 969 WP_002872671.1 ABC transporter permease Machinery gene
  WHQ29_RS03990 (WHQ29_03990) pldA 760630..761619 (-) 990 WP_002864239.1 phospholipase A -
  WHQ29_RS03995 (WHQ29_03995) mobA 761616..762191 (-) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHQ29_RS04000 (WHQ29_04000) - 762253..763560 (+) 1308 WP_002864240.1 NFACT family protein -
  WHQ29_RS04005 (WHQ29_04005) - 763562..763900 (+) 339 WP_002852397.1 hypothetical protein -
  WHQ29_RS04010 (WHQ29_04010) cdsA 763909..764634 (+) 726 WP_002889945.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35469.40 Da        Isoelectric Point: 9.6678

>NTDB_id=952475 WHQ29_RS03985 WP_002872671.1 759576..760544(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0080]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=952475 WHQ29_RS03985 WP_002872671.1 759576..760544(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0080]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991