Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHQ13_RS06185 Genome accession   NZ_CP148185
Coordinates   1177883..1178833 (+) Length   316 a.a.
NCBI ID   WP_011049891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0087     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1165929..1188939 1177883..1178833 within 0


Gene organization within MGE regions


Location: 1165929..1188939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ13_RS06130 (WHQ13_06130) pglK 1165929..1167623 (-) 1695 WP_002867213.1 ABC-type lipopolysaccharide transporter PglK -
  WHQ13_RS06135 (WHQ13_06135) galE 1167617..1168603 (-) 987 WP_002867214.1 UDP-glucose 4-epimerase GalE -
  WHQ13_RS06140 (WHQ13_06140) - 1168662..1169456 (-) 795 WP_002860221.1 3'-5' exonuclease -
  WHQ13_RS06145 (WHQ13_06145) waaC 1169523..1170551 (+) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  WHQ13_RS06150 (WHQ13_06150) htrB 1170541..1171428 (+) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHQ13_RS06155 (WHQ13_06155) - 1171425..1172975 (+) 1551 WP_002867216.1 glycosyltransferase -
  WHQ13_RS06160 (WHQ13_06160) - 1172944..1173831 (-) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  WHQ13_RS06165 (WHQ13_06165) - 1173824..1175032 (-) 1209 WP_011049887.1 glycosyltransferase family 2 protein -
  WHQ13_RS06170 (WHQ13_06170) - 1175110..1176081 (-) 972 WP_011049888.1 glycosyltransferase -
  WHQ13_RS06175 (WHQ13_06175) - 1176074..1176961 (-) 888 WP_011049889.1 glycosyltransferase -
  WHQ13_RS06180 (WHQ13_06180) waaV 1177015..1177824 (-) 810 WP_011049890.1 glycosyltransferase family 2 protein -
  WHQ13_RS06185 (WHQ13_06185) waaF 1177883..1178833 (+) 951 WP_011049891.1 lipopolysaccharide heptosyltransferase II Regulator
  WHQ13_RS06190 (WHQ13_06190) - 1178819..1179583 (-) 765 WP_002884483.1 glycosyltransferase family 25 protein -
  WHQ13_RS06195 (WHQ13_06195) gmhA 1179583..1180143 (-) 561 WP_338877844.1 D-sedoheptulose 7-phosphate isomerase -
  WHQ13_RS06200 (WHQ13_06200) rfaE1 1180140..1181525 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHQ13_RS06205 (WHQ13_06205) rfaD 1181518..1182471 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  WHQ13_RS06210 (WHQ13_06210) gmhB 1182472..1183033 (-) 562 Protein_1204 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHQ13_RS06215 (WHQ13_06215) - 1183114..1183416 (+) 303 WP_002852762.1 cytochrome c -
  WHQ13_RS06220 (WHQ13_06220) ccoS 1183439..1183645 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHQ13_RS06225 (WHQ13_06225) - 1183642..1185999 (-) 2358 WP_079254352.1 heavy metal translocating P-type ATPase -
  WHQ13_RS06230 (WHQ13_06230) rho 1186108..1187406 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  WHQ13_RS06235 (WHQ13_06235) dnaX 1187410..1188939 (+) 1530 WP_002867395.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36213.76 Da        Isoelectric Point: 10.2878

>NTDB_id=952447 WHQ13_RS06185 WP_011049891.1 1177883..1178833(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0087]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=952447 WHQ13_RS06185 WP_011049891.1 1177883..1178833(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0087]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918