Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACH6FI_RS07320 Genome accession   NZ_CP172364
Coordinates   1349356..1350222 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344356..1355222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FI_RS07300 (ACH6FI_07295) metF 1346209..1347057 (+) 849 WP_032583796.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ACH6FI_RS07305 (ACH6FI_07300) - 1347079..1347270 (-) 192 WP_032583798.1 hypothetical protein -
  ACH6FI_RS07310 (ACH6FI_07305) atpB 1347267..1347947 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  ACH6FI_RS07315 (ACH6FI_07310) radA 1348016..1349356 (-) 1341 WP_002852872.1 DNA repair protein RadA Machinery gene
  ACH6FI_RS07320 (ACH6FI_07315) pilA 1349356..1350222 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  ACH6FI_RS07325 (ACH6FI_07320) - 1350222..1350779 (-) 558 WP_002852864.1 TlpA disulfide reductase family protein -
  ACH6FI_RS07330 (ACH6FI_07325) - 1350862..1351488 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  ACH6FI_RS07335 (ACH6FI_07330) rny 1351409..1352962 (+) 1554 WP_002852704.1 ribonuclease Y -
  ACH6FI_RS07340 (ACH6FI_07335) - 1352971..1353528 (+) 558 WP_002852823.1 DedA family protein -
  ACH6FI_RS07345 (ACH6FI_07340) - 1353528..1354787 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=952445 ACH6FI_RS07320 WP_002852840.1 1349356..1350222(-) (pilA) [Campylobacter jejuni strain YH021]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=952445 ACH6FI_RS07320 WP_002852840.1 1349356..1350222(-) (pilA) [Campylobacter jejuni strain YH021]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434