Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHQ13_RS03605 Genome accession   NZ_CP148185
Coordinates   676017..676454 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0087     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671017..681454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ13_RS03580 (WHQ13_03580) - 671630..672655 (+) 1026 WP_237920616.1 sensor histidine kinase KdpD -
  WHQ13_RS03585 (WHQ13_03585) - 672679..673329 (+) 651 WP_224281667.1 DUF4118 domain-containing protein -
  WHQ13_RS03590 (WHQ13_03590) uvrB 673431..675404 (-) 1974 WP_004316755.1 excinuclease ABC subunit UvrB -
  WHQ13_RS03595 (WHQ13_03595) - 675558..675788 (+) 231 WP_002852327.1 hypothetical protein -
  WHQ13_RS03600 (WHQ13_03600) - 675778..676020 (+) 243 WP_002854947.1 hypothetical protein -
  WHQ13_RS03605 (WHQ13_03605) Cj0683 676017..676454 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ13_RS03610 (WHQ13_03610) priA 676436..678289 (+) 1854 WP_002867637.1 primosomal protein N' -
  WHQ13_RS03615 (WHQ13_03615) cipA 678299..679694 (-) 1396 Protein_701 DUF2972 domain-containing protein -
  WHQ13_RS03620 (WHQ13_03620) ispG 679840..680913 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952442 WHQ13_RS03605 WP_002852324.1 676017..676454(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0087]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952442 WHQ13_RS03605 WP_002852324.1 676017..676454(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0087]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1