Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHP72_RS07205 Genome accession   NZ_CP148184
Coordinates   1379567..1380535 (+) Length   322 a.a.
NCBI ID   WP_063668012.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0088     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374567..1385535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP72_RS07180 (WHP72_07180) cdsA 1375477..1376202 (-) 726 WP_063668013.1 phosphatidate cytidylyltransferase -
  WHP72_RS07185 (WHP72_07185) - 1376211..1376549 (-) 339 WP_002852397.1 hypothetical protein -
  WHP72_RS07190 (WHP72_07190) - 1376551..1377858 (-) 1308 WP_338877857.1 NFACT family protein -
  WHP72_RS07195 (WHP72_07195) mobA 1377920..1378495 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHP72_RS07200 (WHP72_07200) pldA 1378492..1379481 (+) 990 WP_002867311.1 phospholipase A -
  WHP72_RS07205 (WHP72_07205) ceuB 1379567..1380535 (+) 969 WP_063668012.1 ABC transporter permease Machinery gene
  WHP72_RS07210 (WHP72_07210) ceuC 1380528..1381466 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  WHP72_RS07215 (WHP72_07215) ceuD 1381463..1382218 (+) 756 WP_063668011.1 ABC transporter ATP-binding protein -
  WHP72_RS07220 (WHP72_07220) ceuB 1382231..1383223 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHP72_RS07230 (WHP72_07230) - 1383449..1384003 (-) 555 WP_011049963.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35481.45 Da        Isoelectric Point: 9.6678

>NTDB_id=952425 WHP72_RS07205 WP_063668012.1 1379567..1380535(+) (ceuB) [Campylobacter jejuni strain Z1323CCJ0088]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=952425 WHP72_RS07205 WP_063668012.1 1379567..1380535(+) (ceuB) [Campylobacter jejuni strain Z1323CCJ0088]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAAGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988