Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP72_RS03615 Genome accession   NZ_CP148184
Coordinates   675016..675453 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0088     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670016..680453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP72_RS03590 (WHP72_03590) - 670629..671654 (+) 1026 WP_237920616.1 sensor histidine kinase KdpD -
  WHP72_RS03595 (WHP72_03595) - 671678..672328 (+) 651 WP_224281667.1 DUF4118 domain-containing protein -
  WHP72_RS03600 (WHP72_03600) uvrB 672430..674403 (-) 1974 WP_004316755.1 excinuclease ABC subunit UvrB -
  WHP72_RS03605 (WHP72_03605) - 674557..674787 (+) 231 WP_002852327.1 hypothetical protein -
  WHP72_RS03610 (WHP72_03610) - 674777..675019 (+) 243 WP_002854947.1 hypothetical protein -
  WHP72_RS03615 (WHP72_03615) Cj0683 675016..675453 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP72_RS03620 (WHP72_03620) priA 675435..677288 (+) 1854 WP_002867637.1 primosomal protein N' -
  WHP72_RS03625 (WHP72_03625) cipA 677298..678693 (-) 1396 Protein_703 DUF2972 domain-containing protein -
  WHP72_RS03630 (WHP72_03630) ispG 678839..679912 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952415 WHP72_RS03615 WP_002852324.1 675016..675453(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0088]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952415 WHP72_RS03615 WP_002852324.1 675016..675453(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0088]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1