Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHQ40_RS07705 Genome accession   NZ_CP148183
Coordinates   1487523..1488131 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0091     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482523..1493131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ40_RS07680 (WHQ40_07680) - 1482679..1483443 (+) 765 WP_011049985.1 TIGR02757 family protein -
  WHQ40_RS07685 (WHQ40_07685) - 1483447..1484211 (+) 765 WP_002855821.1 TSUP family transporter -
  WHQ40_RS07690 (WHQ40_07690) - 1484204..1485386 (-) 1183 Protein_1495 type II secretion system F family protein -
  WHQ40_RS07695 (WHQ40_07695) ctsE 1485383..1486942 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  WHQ40_RS07700 (WHQ40_07700) ctsX 1486932..1487519 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHQ40_RS07705 (WHQ40_07705) ctsP 1487523..1488131 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ40_RS07710 (WHQ40_07710) ctsD 1488124..1489536 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ40_RS07715 (WHQ40_07715) ctsR 1489514..1489825 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=952403 WHQ40_RS07705 WP_002851464.1 1487523..1488131(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0091]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=952403 WHQ40_RS07705 WP_002851464.1 1487523..1488131(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0091]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995