Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACH6FD_RS06280 Genome accession   NZ_CP172362
Coordinates   1208765..1209631 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1203765..1214631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FD_RS06260 (ACH6FD_06260) metF 1205618..1206466 (+) 849 WP_002860436.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ACH6FD_RS06265 (ACH6FD_06265) - 1206488..1206679 (-) 192 WP_002852856.1 membrane protein -
  ACH6FD_RS06270 (ACH6FD_06270) atpB 1206676..1207356 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  ACH6FD_RS06275 (ACH6FD_06275) radA 1207425..1208765 (-) 1341 WP_002859284.1 DNA repair protein RadA Machinery gene
  ACH6FD_RS06280 (ACH6FD_06280) pilA 1208765..1209631 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  ACH6FD_RS06285 (ACH6FD_06285) - 1209631..1210188 (-) 558 WP_002869638.1 TlpA disulfide reductase family protein -
  ACH6FD_RS06290 (ACH6FD_06290) - 1210271..1210897 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  ACH6FD_RS06295 (ACH6FD_06295) rny 1210818..1212371 (+) 1554 WP_057035853.1 ribonuclease Y -
  ACH6FD_RS06300 (ACH6FD_06300) - 1212380..1212937 (+) 558 WP_002852823.1 DedA family protein -
  ACH6FD_RS06305 (ACH6FD_06305) - 1212937..1214196 (+) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=952399 ACH6FD_RS06280 WP_002852840.1 1208765..1209631(-) (pilA) [Campylobacter jejuni strain YH022]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=952399 ACH6FD_RS06280 WP_002852840.1 1208765..1209631(-) (pilA) [Campylobacter jejuni strain YH022]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434