Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHQ40_RS06180 Genome accession   NZ_CP148183
Coordinates   1175712..1176662 (+) Length   316 a.a.
NCBI ID   WP_011049891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0091     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1161760..1186768 1175712..1176662 within 0


Gene organization within MGE regions


Location: 1161760..1186768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ40_RS06115 (WHQ40_06115) pglI 1161760..1162689 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  WHQ40_RS06120 (WHQ40_06120) pglH 1162682..1163761 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  WHQ40_RS06125 (WHQ40_06125) pglK 1163758..1165452 (-) 1695 WP_002867213.1 ABC-type lipopolysaccharide transporter PglK -
  WHQ40_RS06130 (WHQ40_06130) galE 1165446..1166432 (-) 987 WP_002867214.1 UDP-glucose 4-epimerase GalE -
  WHQ40_RS06135 (WHQ40_06135) - 1166491..1167285 (-) 795 WP_002860221.1 3'-5' exonuclease -
  WHQ40_RS06140 (WHQ40_06140) waaC 1167352..1168380 (+) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  WHQ40_RS06145 (WHQ40_06145) htrB 1168370..1169257 (+) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHQ40_RS06150 (WHQ40_06150) - 1169254..1170804 (+) 1551 WP_002867216.1 glycosyltransferase -
  WHQ40_RS06155 (WHQ40_06155) - 1170773..1171660 (-) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  WHQ40_RS06160 (WHQ40_06160) - 1171653..1172861 (-) 1209 WP_011049887.1 glycosyltransferase family 2 protein -
  WHQ40_RS06165 (WHQ40_06165) - 1172939..1173910 (-) 972 WP_011049888.1 glycosyltransferase -
  WHQ40_RS06170 (WHQ40_06170) - 1173903..1174790 (-) 888 WP_011049889.1 glycosyltransferase -
  WHQ40_RS06175 (WHQ40_06175) waaV 1174844..1175653 (-) 810 WP_011049890.1 glycosyltransferase family 2 protein -
  WHQ40_RS06180 (WHQ40_06180) waaF 1175712..1176662 (+) 951 WP_011049891.1 lipopolysaccharide heptosyltransferase II Regulator
  WHQ40_RS06185 (WHQ40_06185) - 1176648..1177412 (-) 765 WP_002884483.1 glycosyltransferase family 25 protein -
  WHQ40_RS06190 (WHQ40_06190) gmhA 1177412..1177972 (-) 561 WP_338877844.1 D-sedoheptulose 7-phosphate isomerase -
  WHQ40_RS06195 (WHQ40_06195) rfaE1 1177969..1179354 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHQ40_RS06200 (WHQ40_06200) rfaD 1179347..1180300 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  WHQ40_RS06205 (WHQ40_06205) gmhB 1180301..1180862 (-) 562 Protein_1203 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHQ40_RS06210 (WHQ40_06210) - 1180943..1181245 (+) 303 WP_002852762.1 cytochrome c -
  WHQ40_RS06215 (WHQ40_06215) ccoS 1181268..1181474 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  WHQ40_RS06220 (WHQ40_06220) - 1181471..1183828 (-) 2358 WP_079254352.1 heavy metal translocating P-type ATPase -
  WHQ40_RS06225 (WHQ40_06225) rho 1183937..1185235 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  WHQ40_RS06230 (WHQ40_06230) dnaX 1185239..1186768 (+) 1530 WP_002867395.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36213.76 Da        Isoelectric Point: 10.2878

>NTDB_id=952393 WHQ40_RS06180 WP_011049891.1 1175712..1176662(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0091]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=952393 WHQ40_RS06180 WP_011049891.1 1175712..1176662(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0091]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918