Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHQ30_RS02970 | Genome accession | NZ_CP148182 |
| Coordinates | 581522..582472 (-) | Length | 316 a.a. |
| NCBI ID | WP_002867402.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323CCJ0095 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 577884..611736 | 581522..582472 | within | 0 |
Gene organization within MGE regions
Location: 577884..611736
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHQ30_RS02950 (WHQ30_02950) | rfaD | 577884..578837 (+) | 954 | WP_234728994.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHQ30_RS02955 (WHQ30_02955) | rfaE1 | 578830..580215 (+) | 1386 | WP_002867399.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHQ30_RS02960 (WHQ30_02960) | gmhA | 580212..580772 (+) | 561 | WP_002867400.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHQ30_RS02965 (WHQ30_02965) | - | 580772..581536 (+) | 765 | WP_002867401.1 | glycosyltransferase family 25 protein | - |
| WHQ30_RS02970 (WHQ30_02970) | waaF | 581522..582472 (-) | 951 | WP_002867402.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHQ30_RS02975 (WHQ30_02975) | - | 582531..583352 (+) | 822 | WP_002867403.1 | glycosyltransferase family 2 protein | - |
| WHQ30_RS02980 (WHQ30_02980) | - | 583423..584379 (+) | 957 | WP_002867404.1 | UDP-glucuronic acid decarboxylase family protein | - |
| WHQ30_RS02985 (WHQ30_02985) | - | 584385..585686 (+) | 1302 | WP_338851171.1 | UDP-glucose/GDP-mannose dehydrogenase family protein | - |
| WHQ30_RS02990 (WHQ30_02990) | galE | 585683..586657 (+) | 975 | WP_146263329.1 | UDP-glucose 4-epimerase GalE | - |
| WHQ30_RS02995 (WHQ30_02995) | glf | 586659..587768 (+) | 1110 | WP_234728995.1 | UDP-galactopyranose mutase | - |
| WHQ30_RS03000 (WHQ30_03000) | - | 587851..588900 (+) | 1050 | WP_002867408.1 | glycosyltransferase | - |
| WHQ30_RS03005 (WHQ30_03005) | - | 588897..589949 (+) | 1053 | WP_100608349.1 | glycosyltransferase family 2 protein | - |
| WHQ30_RS03010 (WHQ30_03010) | - | 590155..591090 (+) | 936 | Protein_577 | glycosyltransferase family 2 protein | - |
| WHQ30_RS03015 (WHQ30_03015) | - | 591168..592376 (+) | 1209 | WP_146263328.1 | glycosyltransferase family 2 protein | - |
| WHQ30_RS03020 (WHQ30_03020) | - | 592369..593256 (+) | 888 | WP_011049886.1 | glycosyltransferase family 2 protein | - |
| WHQ30_RS03025 (WHQ30_03025) | - | 593225..594775 (-) | 1551 | WP_002867216.1 | glycosyltransferase | - |
| WHQ30_RS03030 (WHQ30_03030) | htrB | 594772..595659 (-) | 888 | WP_002867215.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHQ30_RS03035 (WHQ30_03035) | waaC | 595649..596677 (-) | 1029 | WP_002859241.1 | lipopolysaccharide heptosyltransferase I | - |
| WHQ30_RS03040 (WHQ30_03040) | - | 596744..597538 (+) | 795 | WP_002860221.1 | 3'-5' exonuclease | - |
| WHQ30_RS03045 (WHQ30_03045) | galE | 597597..598583 (+) | 987 | WP_002867214.1 | UDP-glucose 4-epimerase GalE | - |
| WHQ30_RS03050 (WHQ30_03050) | pglK | 598577..600271 (+) | 1695 | WP_146263327.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHQ30_RS03055 (WHQ30_03055) | pglH | 600268..601347 (+) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHQ30_RS03060 (WHQ30_03060) | pglI | 601340..602269 (+) | 930 | WP_002854071.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHQ30_RS03065 (WHQ30_03065) | pglJ | 602257..603354 (+) | 1098 | WP_002853444.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| WHQ30_RS03070 (WHQ30_03070) | pglB | 603358..605499 (+) | 2142 | WP_338851172.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| WHQ30_RS03075 (WHQ30_03075) | pglA | 605509..606639 (+) | 1131 | WP_338851173.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| WHQ30_RS03080 (WHQ30_03080) | pglC | 606632..607234 (+) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| WHQ30_RS03085 (WHQ30_03085) | pglD | 607221..607811 (+) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| WHQ30_RS03090 (WHQ30_03090) | pglE | 607909..609069 (+) | 1161 | WP_146263325.1 | UDP-N-acetylbacillosamine transaminase | - |
| WHQ30_RS03095 (WHQ30_03095) | pglF | 609071..610843 (+) | 1773 | WP_052791641.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| WHQ30_RS03100 (WHQ30_03100) | pglG | 610843..611736 (+) | 894 | WP_002856519.1 | PDC sensor domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36324.91 Da Isoelectric Point: 10.3207
>NTDB_id=952366 WHQ30_RS02970 WP_002867402.1 581522..582472(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0095]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
Nucleotide
Download Length: 951 bp
>NTDB_id=952366 WHQ30_RS02970 WP_002867402.1 581522..582472(-) (waaF) [Campylobacter jejuni strain Z1323CCJ0095]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.652 |
99.051 |
0.918 |