Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP84_RS03595 Genome accession   NZ_CP148181
Coordinates   692742..693701 (+) Length   319 a.a.
NCBI ID   WP_002852903.1    Uniprot ID   A0A5Y6P8U5
Organism   Campylobacter jejuni strain Z1323CCJ0101     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 687742..698701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP84_RS03565 (WHP84_03565) neuC 688333..689457 (+) 1125 WP_002859249.1 UDP-N-acetylglucosamine 2-epimerase -
  WHP84_RS03570 (WHP84_03570) - 689450..690397 (+) 948 WP_002896736.1 glycosyltransferase -
  WHP84_RS03575 (WHP84_03575) - 690394..691059 (+) 666 WP_228567890.1 acylneuraminate cytidylyltransferase family protein -
  WHP84_RS03580 (WHP84_03580) - 691047..691493 (+) 447 WP_002852791.1 hypothetical protein -
  WHP84_RS03585 (WHP84_03585) - 691538..691879 (+) 342 WP_002852868.1 hypothetical protein -
  WHP84_RS03590 (WHP84_03590) - 691871..692683 (-) 813 WP_002852816.1 glycosyltransferase family 2 protein -
  WHP84_RS03595 (WHP84_03595) waaF 692742..693701 (+) 960 WP_002852903.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP84_RS03600 (WHP84_03600) gmhA 693682..694242 (-) 561 WP_002852775.1 D-sedoheptulose 7-phosphate isomerase -
  WHP84_RS03605 (WHP84_03605) rfaE1 694239..695624 (-) 1386 WP_002852777.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP84_RS03610 (WHP84_03610) rfaD 695617..696570 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP84_RS03615 (WHP84_03615) gmhB 696571..697131 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHP84_RS03620 (WHP84_03620) - 697213..697515 (+) 303 WP_002852762.1 cytochrome c -
  WHP84_RS03625 (WHP84_03625) ccoS 697538..697744 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36766.44 Da        Isoelectric Point: 10.4054

>NTDB_id=952331 WHP84_RS03595 WP_002852903.1 692742..693701(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0101]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=952331 WHP84_RS03595 WP_002852903.1 692742..693701(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0101]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y6P8U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.984

100

0.95