Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FF_RS03390 Genome accession   NZ_CP172356
Coordinates   645024..645407 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain YH025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 640024..650407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FF_RS03370 (ACH6FF_03370) - 640103..642037 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  ACH6FF_RS03375 (ACH6FF_03375) ilvC 642156..643178 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  ACH6FF_RS03380 (ACH6FF_03380) - 643182..644264 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  ACH6FF_RS03385 (ACH6FF_03385) dprA 644254..645027 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  ACH6FF_RS03390 (ACH6FF_03390) dprB 645024..645407 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FF_RS03395 (ACH6FF_03395) - 645436..646275 (+) 840 WP_072223322.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FF_RS03400 (ACH6FF_03400) msrA 646450..646947 (-) 498 WP_002871807.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FF_RS03405 (ACH6FF_03405) ppa 646988..647506 (-) 519 WP_052796622.1 inorganic diphosphatase -
  ACH6FF_RS03410 (ACH6FF_03410) adk 647516..648094 (-) 579 WP_002858481.1 adenylate kinase -
  ACH6FF_RS03415 (ACH6FF_03415) aspS 648091..649842 (-) 1752 WP_052796623.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=952243 ACH6FF_RS03390 WP_002852281.1 645024..645407(+) (dprB) [Campylobacter jejuni strain YH025]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952243 ACH6FF_RS03390 WP_002852281.1 645024..645407(+) (dprB) [Campylobacter jejuni strain YH025]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449