Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FN_RS05520 Genome accession   NZ_CP172354
Coordinates   1043198..1043749 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1038198..1048749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FN_RS05490 (ACH6FN_05500) pgsA 1038294..1038830 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6FN_RS05495 (ACH6FN_05505) rseP 1038827..1039933 (+) 1107 WP_002858350.1 RIP metalloprotease RseP -
  ACH6FN_RS05500 (ACH6FN_05510) - 1039926..1040798 (+) 873 WP_002858448.1 VirK family antimicrobial peptide resistance protein -
  ACH6FN_RS05505 (ACH6FN_05515) - 1040776..1042131 (-) 1356 WP_002863358.1 FAD-dependent oxidoreductase -
  ACH6FN_RS05510 (ACH6FN_05520) - 1042146..1042583 (-) 438 WP_002857985.1 DUF302 domain-containing protein -
  ACH6FN_RS05515 (ACH6FN_05525) rpsF 1042812..1043189 (+) 378 WP_002858097.1 30S ribosomal protein S6 -
  ACH6FN_RS05520 (ACH6FN_05530) ssb 1043198..1043749 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  ACH6FN_RS05525 (ACH6FN_05535) rpsR 1043760..1044020 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACH6FN_RS05530 (ACH6FN_05540) lon 1044081..1046456 (-) 2376 WP_002858084.1 endopeptidase La -
  ACH6FN_RS05535 (ACH6FN_05545) - 1046473..1047120 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  ACH6FN_RS05540 (ACH6FN_05550) fliW 1047281..1047670 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6FN_RS05545 (ACH6FN_05555) proC 1047670..1048401 (+) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FN_RS05550 (ACH6FN_05560) ctsT 1048398..1048700 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=952204 ACH6FN_RS05520 WP_002856575.1 1043198..1043749(+) (ssb) [Campylobacter jejuni strain YH026]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=952204 ACH6FN_RS05520 WP_002856575.1 1043198..1043749(+) (ssb) [Campylobacter jejuni strain YH026]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372