Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ47_RS07295 Genome accession   NZ_CP148172
Coordinates   1421916..1422233 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain Z1323HCJ0023     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416916..1427233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ47_RS07275 (WHQ47_07275) ctsE 1417785..1419344 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHQ47_RS07280 (WHQ47_07280) ctsX 1419334..1419921 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ47_RS07285 (WHQ47_07285) ctsP 1419925..1420533 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ47_RS07290 (WHQ47_07290) ctsD 1420526..1421944 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ47_RS07295 (WHQ47_07295) ctsR 1421916..1422233 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  WHQ47_RS07300 (WHQ47_07300) nifJ 1422257..1425817 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ47_RS07305 (WHQ47_07305) - 1425910..1426551 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=952186 WHQ47_RS07295 WP_002851255.1 1421916..1422233(-) (ctsR) [Campylobacter jejuni strain Z1323HCJ0023]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=952186 WHQ47_RS07295 WP_002851255.1 1421916..1422233(-) (ctsR) [Campylobacter jejuni strain Z1323HCJ0023]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981