Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACH6FW_RS06185 Genome accession   NZ_CP172352
Coordinates   1172000..1173340 (-) Length   446 a.a.
NCBI ID   WP_002916173.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1167000..1178340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FW_RS06160 (ACH6FW_06160) - 1167137..1167907 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  ACH6FW_RS06165 (ACH6FW_06165) metE 1167919..1170183 (+) 2265 WP_002858088.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ACH6FW_RS06170 (ACH6FW_06170) metF 1170193..1171041 (+) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ACH6FW_RS06175 (ACH6FW_06175) - 1171063..1171254 (-) 192 WP_002852856.1 membrane protein -
  ACH6FW_RS06180 (ACH6FW_06180) atpB 1171251..1171931 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  ACH6FW_RS06185 (ACH6FW_06185) radA/sms 1172000..1173340 (-) 1341 WP_002916173.1 DNA repair protein RadA Machinery gene
  ACH6FW_RS06190 (ACH6FW_06190) pilA 1173340..1174206 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  ACH6FW_RS06195 (ACH6FW_06195) - 1174206..1174763 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  ACH6FW_RS06200 (ACH6FW_06200) - 1174846..1175472 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  ACH6FW_RS06205 (ACH6FW_06205) rny 1175393..1176946 (+) 1554 WP_002858133.1 ribonuclease Y -
  ACH6FW_RS06210 (ACH6FW_06210) - 1176955..1177512 (+) 558 WP_002856055.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49010.89 Da        Isoelectric Point: 6.9288

>NTDB_id=952168 ACH6FW_RS06185 WP_002916173.1 1172000..1173340(-) (radA/sms) [Campylobacter jejuni strain YH027]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQVKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=952168 ACH6FW_RS06185 WP_002916173.1 1172000..1173340(-) (radA/sms) [Campylobacter jejuni strain YH027]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGCATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAGCATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGGTTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTAATGGAGGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTGGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACGGGCTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTGGGGCA
TTATGATGTATTTGTAAATATTAGTGGCGGAGTAAAAGTAAGCGAAACTGCGGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.897

97.534

0.457
  radA Streptococcus pneumoniae Rx1

45.638

100

0.457
  radA Streptococcus pneumoniae D39

45.638

100

0.457
  radA Streptococcus pneumoniae R6

45.638

100

0.457
  radA Streptococcus pneumoniae TIGR4

45.638

100

0.457
  radA Streptococcus mitis NCTC 12261

45.618

99.776

0.455
  radA Streptococcus mitis SK321

45.618

99.776

0.455