Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP63_RS07100 Genome accession   NZ_CP148170
Coordinates   1391938..1392249 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323HCJ0025     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386938..1397249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP63_RS07080 (WHP63_07080) ctsE 1387807..1389366 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  WHP63_RS07085 (WHP63_07085) ctsX 1389356..1389943 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP63_RS07090 (WHP63_07090) ctsP 1389947..1390555 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP63_RS07095 (WHP63_07095) ctsD 1390548..1391960 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP63_RS07100 (WHP63_07100) ctsR 1391938..1392249 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP63_RS07105 (WHP63_07105) nifJ 1392273..1395833 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP63_RS07110 (WHP63_07110) - 1395926..1396567 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952159 WHP63_RS07100 WP_002855438.1 1391938..1392249(-) (ctsR) [Campylobacter jejuni strain Z1323HCJ0025]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952159 WHP63_RS07100 WP_002855438.1 1391938..1392249(-) (ctsR) [Campylobacter jejuni strain Z1323HCJ0025]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1