Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FW_RS03120 Genome accession   NZ_CP172352
Coordinates   594878..595261 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589878..600261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FW_RS03100 (ACH6FW_03100) - 589958..591892 (-) 1935 WP_002931138.1 ribonuclease R family protein -
  ACH6FW_RS03105 (ACH6FW_03105) ilvC 592010..593032 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  ACH6FW_RS03110 (ACH6FW_03110) - 593036..594118 (+) 1083 WP_002931136.1 divergent polysaccharide deacetylase family protein -
  ACH6FW_RS03115 (ACH6FW_03115) dprA 594108..594881 (+) 774 WP_002926145.1 DNA-processing protein DprA Machinery gene
  ACH6FW_RS03120 (ACH6FW_03120) dprB 594878..595261 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FW_RS03125 (ACH6FW_03125) - 595290..596129 (+) 840 WP_079263941.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FW_RS03130 (ACH6FW_03130) msrA 596305..596802 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FW_RS03135 (ACH6FW_03135) ppa 596843..597361 (-) 519 WP_002855031.1 inorganic diphosphatase -
  ACH6FW_RS03140 (ACH6FW_03140) adk 597371..597949 (-) 579 WP_002855137.1 adenylate kinase -
  ACH6FW_RS03145 (ACH6FW_03145) aspS 597946..599697 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=952153 ACH6FW_RS03120 WP_002856861.1 594878..595261(+) (dprB) [Campylobacter jejuni strain YH027]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952153 ACH6FW_RS03120 WP_002856861.1 594878..595261(+) (dprB) [Campylobacter jejuni strain YH027]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449