Detailed information NTG0952119

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: WHQ31_RS05535
• Genome accession: NZ_CP148168
• Coordinates: 1071800..1072750 (+)
• Length: 316 a.a.
• NCBI ID: WP_002899461.1
• Uniprot ID: A0A5Z1S6J2
• Organism: Campylobacter jejuni strain Z1323HCJ0028
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1066800..1077750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHQ31_RS05520 (WHQ31_05520)	-	1067648..1069579 (-)	1932	WP_052785346.1	hypothetical protein	-
WHQ31_RS05525 (WHQ31_05525)	-	1069655..1070929 (+)	1275	WP_052785345.1	DUF2972 domain-containing protein	-
WHQ31_RS05530 (WHQ31_05530)	-	1070893..1071741 (-)	849	WP_002899460.1	glycosyltransferase family 2 protein	-
WHQ31_RS05535 (WHQ31_05535)	waaF	1071800..1072750 (+)	951	WP_002899461.1	lipopolysaccharide heptosyltransferase II	Regulator
WHQ31_RS05540 (WHQ31_05540)	-	1072736..1073500 (-)	765	WP_002899462.1	glycosyltransferase family 25 protein	-
WHQ31_RS05545 (WHQ31_05545)	gmhA	1073500..1074060 (-)	561	WP_002881439.1	D-sedoheptulose 7-phosphate isomerase	-
WHQ31_RS05550 (WHQ31_05550)	rfaE1	1074057..1075442 (-)	1386	WP_052785344.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
WHQ31_RS05555 (WHQ31_05555)	rfaD	1075435..1076388 (-)	954	WP_038813706.1	ADP-glyceromanno-heptose 6-epimerase	-
WHQ31_RS05560 (WHQ31_05560)	gmhB	1076389..1076949 (-)	561	WP_052794772.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
WHQ31_RS05565 (WHQ31_05565)	-	1077031..1077333 (+)	303	WP_002852762.1	cytochrome c	-
WHQ31_RS05570 (WHQ31_05570)	ccoS	1077356..1077562 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36265.84 Da
• Isoelectric Point: 10.2322

>NTDB_id=952119 WHQ31_RS05535 WP_002899461.1 1071800..1072750(+) (waaF) [Campylobacter jejuni strain Z1323HCJ0028]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide

• Length: 951 bp

>NTDB_id=952119 WHQ31_RS05535 WP_002899461.1 1071800..1072750(+) (waaF) [Campylobacter jejuni strain Z1323HCJ0028]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCACGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGATAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: A0A5Z1S6J2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.541	99.367	0.949